AT3G59380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.929 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : farnesyltransferase A | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21944209..21945781 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37986.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 326 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFDETVPLS QRLEWSDVVP LTQDDGPNPV VPIAYKEEFR ETMDYFRAIY FSDERSPRAL RLTEETLLLN SGNYTVWHFR RLVLEALNHD LFEELEFIER 101: IAEDNSKNYQ LWHHRRWVAE KLGPDVAGRE LEFTRRVLSL DAKHYHAWSH RQWTLRALGG WEDELDYCHE LLEADVFNNS AWNQRYYVIT QSPLLGGLEA 201: MRESEVSYTI KAILTNPANE SSWRYLKALY KDDKESWISD PSVSSVCLNV LSRTDCFHGF ALSTLLDLLC DGLRPTNEHK DSVRALANEE PETNLANLVC 301: TILGRVDPVR ANYWAWRKSK ITVAAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)