suba logo
AT3G59370.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar calcium-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar calcium-binding protein-related; Has 1012 Blast hits to 386 proteins in 97 species: Archae - 12; Bacteria - 133; Metazoa - 361; Fungi - 73; Plants - 75; Viruses - 49; Other Eukaryotes - 309 (source: NCBI BLink).
Protein Annotations
EMBL:AK228000EMBL:AL356014EMBL:BT004741EMBL:CP002686EnsemblPlants:AT3G59370EnsemblPlants:AT3G59370.1entrez:825106
GeneID:825106Gramene:AT3G59370.1HOGENOM:HOG000153151KEGG:ath:AT3G59370ncoils:CoilPIR:T49005Proteomes:UP000006548
RefSeq:NP_191496.1STRING:3702.AT3G59370.1TAIR:AT3G59370UniGene:At.34638UniProt:Q9LX34
Coordinates (TAIR10) chr3:-:21942060..21942532
Molecular Weight (calculated) 10582.00 Da
IEP (calculated) 3.83
GRAVY (calculated) -0.78
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MATVEVEHVT SVAVEIVETE VNQHPEEVFV EDAEKTNEDE EEKAAVITET PTVVEEEKKA EEVTETPEEK KTEALEEKQT EVAAAEEVAV EKAKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)