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AT3G59300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G24060.1); Has 75 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AY050863EMBL:AY091205
EMBL:CP002686EnsemblPlants:AT3G59300EnsemblPlants:AT3G59300.1entrez:825099
Gene3D:3.20.180.10GeneID:825099GO:GO:0010181GO:GO:0016491
Gramene:AT3G59300.1hmmpanther:PTHR13343hmmpanther:PTHR13343:SF18HOGENOM:HOG000082760
IntAct:Q949V7InterPro:IPR012349InterPro:IPR019595KEGG:ath:AT3G59300
OMA:DDKSRFDPhylomeDB:Q949V7Proteomes:UP000006548RefSeq:NP_567080.1
STRING:3702.AT3G59300.1SUPFAM:SSF50475TAIR:AT3G59300UniGene:At.19766
UniGene:At.66534UniProt:Q949V7
Coordinates (TAIR10) chr3:+:21918667..21921877
Molecular Weight (calculated) 51595.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.44
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIAAASSFS LGPSHCHQSY TDEFSSSIPY KRTSNARNRV FDGCGSANLS VLSSRCKIPF FGSAFHVSSG GHDLGLTKVS VAADYSDSVP DSSFYGYHPL
101: EDLKPSKRVQ ETKLSASEVA RTTVEANSSA VLVFPGAIHC EPHDHNSWSE FKYVIDDYGD IFFEIPDDEN ILEDPGASNP VKAFFGMDVP RYENTRHHEE
201: YNISDIGNLD QIIFDDHYFE IMDSEARDIP IDWGMPDTSN GVHPIYFAKH LSKAISMDYD RKMDYPSNGV SILGCLRPAF LDEESYIRRL FLSEDRDDYS
301: WEVQGDDNPI TSSRRDENDM SSSLYRLEIV GIELLSLYGA ESSISLQDFQ DAEPDILVHS TSAIIERFNN RGINSSIALK ALCKKKGLHA EEANLISVDS
401: LGMDVRVFAG AQVQTHRFPF KTRATTEMAA EKKIHQLLFP RSRRRKLKCH DESLKDAFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)