suba logo
AT3G59290.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.692
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT2G43160.1); Has 10809 Blast hits to 8703 proteins in 640 species: Archae - 23; Bacteria - 783; Metazoa - 4592; Fungi - 2600; Plants - 971; Viruses - 59; Other Eukaryotes - 1781 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSM0eggNOG:KOG2056EMBL:AL356014EMBL:AY059878EMBL:BT008432EMBL:CP002686EnsemblPlants:AT3G59290
EnsemblPlants:AT3G59290.1entrez:825098Gene3D:1.25.40.90GeneID:825098Genevisible:Q93YP4GO:GO:0005794GO:GO:0015031
GO:GO:0030136Gramene:AT3G59290.1hmmpanther:PTHR12276hmmpanther:PTHR12276:SF45HOGENOM:HOG000239600InParanoid:Q93YP4InterPro:IPR008942
InterPro:IPR013809iPTMnet:Q93YP4KEGG:ath:AT3G59290KO:K12471OMA:SHIPQRTPaxDb:Q93YP4Pfam:PF01417
Pfam:Q93YP4Pfscan:PS50942PhylomeDB:Q93YP4PIR:T48997PRIDE:Q93YP4PRO:PR:Q93YP4PROSITE:PS50942
ProteinModelPortal:Q93YP4Proteomes:UP000006548RefSeq:NP_567079.1SMART:SM00273SMR:Q93YP4STRING:3702.AT3G59290.1SUPFAM:SSF48464
TAIR:AT3G59290UniGene:At.1513UniProt:Q93YP4
Coordinates (TAIR10) chr3:+:21912796..21917474
Molecular Weight (calculated) 109700.00 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.82
Length 1024 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKKAFGQTVR DLKRGVNKKV LKVPGIEQKV LDATSNESWG PHGSLLADIA HASRNYHEYQ ITMGVLWKRL SDSGKNWRHV YKALTVLEYM VGHGSERVIE
0101: EVKEHAYQIT TLSGFQYIDS SGKDQGSNVR KKAQSLVALV NDKERITEVR EKAAANRDKY HNSMHRPSGG YGDKYDYEGR YGDRDEGRSS YGKEREYGYR
0201: DDDRNSRDGD RYSRDSEDRY GRDGNTDDEY RGRSRSVDNY NGSRGRSSDR ERPIEDDGQS SSRDSGAPAD DHSQDGRGGL ERKFSEQNIG AAPPSYEEAV
0301: SESRSPVYSE RDGGETPQVA PPGAAASPLA ENISVDNKAA DFVNESSPQQ VEAFDEFDPR GSVSAACAPT AGASVPAPIP PTVVSTPAPP ASINAEMDLL
0401: GSLSDVFSPN PLAIVTSDST SVETNGQANT GLAPSFSTSQ SSTQPFDDPF GDSPFKAITS ADTETSQHQS FGVPFQPTPP TSNPNNEHNF GFGEAFSAVT
0501: DSEPGVQNMQ APPNLSVFPQ EQFDTSQSEI DILAGILPPS GPPVSLSPQP DSTMPTSQFH PNGNSYESYH HQAAPTDLNM QGQTPFGQAS QQFNMVSHSQ
0601: NHHEGMQFNN GGFTQQPGYA GPATSQPPQY TPGVSSHPPS ESFPHQPGSA TSASSQTPYA TTPNVSAGQF DGGSFMTQQP YGVTQQVHVV PSHIPQRTQS
0701: GPVAAFGNNN NIVGDMHQPG STPSSSSQTP YPTTPNAPSG QFDGGNFMTQ QPYGVIPQVH GVPSHIPQRT QSGPVAAHGN SNNVVGDMFS PAGLSSLETS
0801: ASQPSLTPLT GAIEIVPQNQ KKFEPKSTIW ADTLSRGLVN FNISGPKTNP LADIGVDFEA INRKEKRLEK PTITQQQVTS TINMGKAMGS GTGLGRAGAG
0901: AMRPPTNSMV GSSMPTGMNV GGYGGMNQHQ PIGMNQNHPM GMNQNLSMGM NQNYPMGMNQ NYPMGMGMNM NMGGYGQGYP MQPQQGMGMA PPGAPQGMTG
1001: AYNPMMGQGG YNPQQQQPYG GGYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)