suba logo
AT3G59200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14096.1); Has 2158 Blast hits to 2093 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2158; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10404eggNOG:ENOG410JID8eggNOG:ENOG411172QEMBL:AK117886
EMBL:AL356014EMBL:BT005902EMBL:CP002686EnsemblPlants:AT3G59200
EnsemblPlants:AT3G59200.1entrez:825089Gene3D:3.80.10.10GeneID:825089
Gramene:AT3G59200.1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6HOGENOM:HOG000015201
InParanoid:Q9LX51IntAct:Q9LX51InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G59200OMA:MNIGWEN
PaxDb:Q9LX51Pfam:PF00646Pfam:PF07723Pfam:Q9LX51
Pfscan:PS50181PhylomeDB:Q9LX51PIR:T48988PRIDE:Q9LX51
PRO:PR:Q9LX51PROSITE:PS50181ProteinModelPortal:Q9LX51Proteomes:UP000006548
RefSeq:NP_191479.1SMART:SM00579SMR:Q9LX51STRING:3702.AT3G59200.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G59200UniGene:At.34650
UniProt:Q9LX51
Coordinates (TAIR10) chr3:+:21887484..21889214
Molecular Weight (calculated) 59001.60 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.18
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFVSRDRIS SLPNPVVSHI LSFLPTKEAA STSVLSKKWR YLFAYVTNLD FDDSDYQDGK PKSDVELSRS FMEFVDRVLA LQGNGSVNKF SLECSNYDVD
101: LARVTGWILN VLGRGVSELD LSILEYPLPS EIFVSKTLVR LKLGPANDLT LTLDRKDVFL PKLKTLYIDC VDVQERGFGF VKLLSGCPVL EELVLMNIGW
201: ENWKFCSVSV KTLKRLTFFC EETYENPKSV SFDTPNLVYL EYSDAIASKY PKVNFNSLVE AHIGLRLTED QSGDADFSEE DYFSEGDEKK QMVGNATDFL
301: KGISTVQILY LSAQAIEVLT FCCEPIPVFN NLIQLTIENN SEIRWDSLPG LLKNCPNLET LVLKRLLHKY NKACGNVCCC KRPKQPSCLS SSPVKVLKIF
401: LFDDNDEEDG SEMRQIKYFL EKMPRLEELV VYYNTAYDPA VLELSKKLQK IPKIASPKCK IQVISENLSL SSTVPSFLTT RWSSLPPEEA YPWVDSPPPQ
501: IIDPMLEYGS PPEDDDSWLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)