AT3G59180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.793 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 885 Blast hits to 857 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21880719..21882459 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54393.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKERIRFLQV LWILWIEYWH CKAILLSKHR RRWIHKSFKL FVNRLMALQG NAPLNRFSLK CKVRCDSACV DGWIINVLDR GVLDLDLNIS SESDYKLPSE 101: VFLNKTLVRL KLGGKDEFII DVEEVFLPKL KTLYLHGFVC FEDSGVACAK LISGCPVLEE LVMINLMWGL MDVCSVSNPT LKRVTICSEI IDYNPQSVSF 201: DTPNLVYLEF TDVVAIKYPK VNLDSLVDAR LGLRLTPCQT TKARRSVKSV GQGMMGNAAD FLMGISNVKI LYLSFDTLEV LNFCCKTIPL FNNLTYLTIE 301: TNEDVGWESL SNILENCPNL ETIIFKGLHY RDTNQCWDER YRFKDTNKCF EEDADMCMCK PWEATPICLS SSSVKILEVL KFGEVTSYKD DMDRQTEVIK 401: FFLETMPNLE QVILYYDTPF DDDLSILSTE LQMLEKVASP KCKIQVISDN ISYSSTVHSS SSTSGLVFLN NTFPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)