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AT3G59150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.948
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.2); Has 1506 Blast hits to 1463 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10399EMBL:AL163527EMBL:AL356014EMBL:AY099781EMBL:BT006604EMBL:CP002686EnsemblPlants:AT3G59150
EnsemblPlants:AT3G59150.1entrez:825084Gene3D:3.80.10.10GeneID:825084Gramene:AT3G59150.1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6
HOGENOM:HOG000015201InParanoid:Q9LX56IntAct:Q9LX56InterPro:IPR001810InterPro:IPR006566InterPro:IPR032675iPTMnet:Q9LX56
KEGG:ath:AT3G59150PaxDb:Q9LX56Pfam:PF00646Pfam:Q9LX56Pfscan:PS50181PhylomeDB:Q9LX56PIR:T47797
PIR:T48983PRIDE:Q9LX56PRO:PR:Q9LX56PROSITE:PS50181ProteinModelPortal:Q9LX56Proteomes:UP000006548RefSeq:NP_191474.2
SMART:SM00256SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G59150UniGene:At.34657UniProt:Q9LX56
Coordinates (TAIR10) chr3:+:21872729..21874422
Molecular Weight (calculated) 57838.40 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.03
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MFIVFSFSHT RKTCEFCDRI QLSISQGFEN PNLSMEANKK AKPSYGDVIS NLPNDLLCRI LSYLSTKEAA LTSILSKRWS NLLLSIPILD FDDSVLLKPQ
101: KGQRKNVFFK AFVDRLLSQR VETSSHVQRV SLKCRQGGVE PDCVIKWILT TVRDLGVLDL SLCIDFGIFH LPFNVFRSKT LVKLRIGTMI RLSQFPSDVV
201: SPTLNSLVLD LVEFRDGDKV EFRQILLAFP SLQSLRVHES NKWKFWNGSA SSRTLKSLVY RSDDDSSAPK PCVSFDTPSL VYLDYSDMVA DKYENLKFDS
301: LVEARLDLHL TAFQIMRKPN NIGIVSGDVT TLFKGIRNVK ILCLSPDALE ALYYRGEKIP MFNNLITLSL GSDKPHGSPF IFWKLLPSLL NNSLKLETLI
401: IKGLVHYVAE GWEGLSPMTP MSRLCFSWDT VSDSLSSSAM KVLEISGYKG TWQELNQMKR FLGNLSRLEV VRVYHKAMDD KERINVMFDL FLLPKVSSEC
501: DIQVMKETA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)