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AT3G59040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 49720 Blast hits to 14374 proteins in 322 species: Archae - 6; Bacteria - 73; Metazoa - 697; Fungi - 944; Plants - 46205; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL163527EMBL:AY080770EMBL:BT000951EMBL:CP002686EnsemblPlants:AT3G59040
EnsemblPlants:AT3G59040.1entrez:825073ExpressionAtlas:Q9LYT2Gene3D:1.25.40.10GeneID:825073Genevisible:Q9LYT2hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF722HOGENOM:HOG000242626InParanoid:Q9LYT2InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G59040ncoils:Coil
PaxDb:Q9LYT2Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9LYT2Pfscan:PS51375PhylomeDB:Q9LYT2
PIR:T47786PRIDE:Q9LYT2PRO:PR:Q9LYT2PROSITE:PS51375ProteinModelPortal:Q9LYT2Proteomes:UP000006548RefSeq:NP_191463.2
SMR:Q9LYT2STRING:3702.AT3G59040.2SUPFAM:SSF81901TAIR:AT3G59040TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.46184
UniGene:At.48783UniProt:Q9LYT2
Coordinates (TAIR10) chr3:-:21821495..21824233
Molecular Weight (calculated) 66165.10 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.45
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)