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AT3G59010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase 61
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pectin methylesterase 61 (PME61); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G43050.1); Has 2708 Blast hits to 2657 proteins in 324 species: Archae - 6; Bacteria - 591; Metazoa - 1; Fungi - 200; Plants - 1884; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G59010-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IVDWEMBL:AL163527EMBL:AY060590EMBL:BT001078
EMBL:CP002686EnsemblPlants:AT3G59010EnsemblPlants:AT3G59010.1entrez:825070Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:825070
Genevisible:Q9LYT5GO:GO:0005576GO:GO:0005618GO:GO:0030599GO:GO:0042545GO:GO:0043086GO:GO:0045330
GO:GO:0045490GO:GO:0046910GO:GO:0071944Gramene:AT3G59010.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707
hmmpanther:PTHR31707:SF29HOGENOM:HOG000217409InParanoid:Q9LYT5InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334
InterPro:IPR033131iPTMnet:Q9LYT5KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT3G59010OMA:NTYQSATPaxDb:Q9LYT5
Pfam:PF01095Pfam:PF04043Pfam:Q9LYT5PhylomeDB:Q9LYT5PIR:T47783PRIDE:Q9LYT5PRO:PR:Q9LYT5
PROSITE:PS00503ProteinModelPortal:Q9LYT5Proteomes:UP000006548RefSeq:NP_191460.1scanprosite:PS00503SMART:SM00856SMR:Q9LYT5
STRING:3702.AT3G59010.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT3G59010tair10-symbols:PME61TMHMM:TMhelixUniGene:At.5019
UniGene:At.66487UniGene:At.67354UniPathway:UPA00545UniProt:Q9LYT5
Coordinates (TAIR10) chr3:-:21803015..21805098
Molecular Weight (calculated) 57516.60 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.26
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTSFSLPN HKFGIKLMLF LVLNLLSLQT SVFAHSSNSK FTKISRHPNS DSSSRTKPST SSNKGFLSSV QLSLDHALFA RSLAFNLTLS HRTSQTLMLD
101: PVNDCLELLD DTLDMLYRIV VIKRKDHVND DVHTWLSAAL TNQETCKQSL SEKSSFNKEG IAIDSFARNL TGLLTNSLDM FVSDKQKSSS SSNLTGGRKL
201: LSDHDFPTWV SSSDRKLLEA SVEELRPHAV VAADGSGTHM SVAEALASLE KGSGRSVIHL TAGTYKENLN IPSKQKNVML VGDGKGKTVI VGSRSNRGGW
301: NTYQSATVAA MGDGFIARDI TFVNSAGPNS EQAVALRVGS DRSVVYRCSI DGYQDSLYTL SKRQFYRETD ITGTVDFIFG NSAVVFQSCN LVSRKGSSDQ
401: NYVTAQGRSD PNQNTGISIH NCRITGSTKT YLGRPWKQYS RTVVMQSFID GSIHPSGWSP WSSNFALKTL YYGEFGNSGP GSSVSGRVSW AGYHPALTLT
501: EAQGFTVSGF IDGNSWLPST GVVFDSGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)