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AT3G59000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.641
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G52650.1); Has 2002 Blast hits to 1957 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2002; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10384EMBL:AL163527EMBL:BT030471EMBL:CP002686
EnsemblPlants:AT3G59000EnsemblPlants:AT3G59000.1entrez:825069Gene3D:3.80.10.10
GeneID:825069Genevisible:Q2V3N5GO:GO:0005634GO:GO:0016567
hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6HOGENOM:HOG000015201InParanoid:Q2V3N5
IntAct:Q2V3N5InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101
InterPro:IPR032675KEGG:ath:AT3G59000PaxDb:Q2V3N5Pfam:PF00646
Pfam:PF07723Pfam:PF12937Pfam:Q2V3N5Pfscan:PS50181
PhylomeDB:Q2V3N5PIR:T47782PRIDE:Q2V3N5PRO:PR:Q2V3N5
PROSITE:PS50181ProteinModelPortal:Q2V3N5Proteomes:UP000006548RefSeq:NP_001030887.1
RefSeq:NP_191459.2SMART:SM00256SMART:SM00579SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT3G59000UniGene:At.50289UniPathway:UPA00143
UniProt:Q2V3N5
Coordinates (TAIR10) chr3:+:21799757..21801536
Molecular Weight (calculated) 55728.60 Da
IEP (calculated) 4.63
GRAVY (calculated) 0.04
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRVGSLPDE LLSHILSFLT TKEAALTSLL SKRWRYLIAF VPNLAFDDIV FLHPEEGKPE RDEIRQSFMD FVDRVLALQA ESPIKKFSLK CRIGVDSDRV
101: DGWISNVLNR GVSELDLLII LGMTMEDSYR LSPKGFASKT LVKLEIGCGI DISWVAGSIF LPMLKTLVLD SVWFYVDKFE TLLLALPALE ELVLVDVNWL
201: DSDVTISNAS LKTLTIDSDG HLGTFSFDTP SLVYFCYSDY AAEDYPVVKM ENLREARIFL LVTDNEIERV RLPINDGLED AMDNVVLRFG HVGKLMNGIR
301: NVEYLELSAD TLEVLSLCCE SMPVFKNLKS LAIKSTEGRG WQAMPVLLRN CPHLEFLLIE GLLHHVTDKC GDACDCVPRE DKGRSLTSCP VNMLEIHGFR
401: GTKKEMQMIK HFLDYFPSLK EMDIYADEDG PTNLEAPGMF EQITQLFTLY DEFYTCDVQF MVRGSLYKKL TAQCCVFKEE NLPHRLVRTL G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)