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AT3G58840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tropomyosin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tropomyosin-related; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT1G06530.1); Has 153429 Blast hits to 70272 proteins in 3237 species: Archae - 2904; Bacteria - 24810; Metazoa - 70427; Fungi - 12541; Plants - 7497; Viruses - 710; Other Eukaryotes - 34540 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0S8eggNOG:ENOG410ZPUSEMBL:AL353032EMBL:AY088565
EMBL:BT024778EMBL:CP002686EnsemblPlants:AT3G58840EnsemblPlants:AT3G58840.1
EnsemblPlants:AT3G58840.2entrez:825053GeneID:825053Genevisible:Q9LXR8
GO:GO:0005739GO:GO:0005741GO:GO:0005777GO:GO:0005778
GO:GO:0007005GO:GO:0007031GO:GO:0009536GO:GO:0016021
GO:GO:0031966GO:GO:0042803Gramene:AT3G58840.1Gramene:AT3G58840.2
hmmpanther:PTHR18937hmmpanther:PTHR18937:SF242KEGG:ath:AT3G58840ncoils:Coil
OMA:ERTMKPSPaxDb:Q9LXR8Pfam:Q9LXR8PhylomeDB:Q9LXR8
PIR:T49167PRO:PR:Q9LXR8ProteinModelPortal:Q9LXR8Proteomes:UP000006548
RefSeq:NP_001078312.1RefSeq:NP_191443.1STRING:3702.AT3G58840.1TAIR:AT3G58840
TMHMM:TMhelixUniProt:Q9LXR8
Coordinates (TAIR10) chr3:-:21757499..21758455
Molecular Weight (calculated) 36597.30 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.95
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVEDRAAK GISDYDQGGV KTTELERKIE DMENKNQELT RENRELKERL ERLTGEIEEM KDVEAEMNQR FGEMEKEIEE YEEEKKALEA ISTRAVELET
101: EVSNLHDDLI TSLNGVDKTA EEVAELKKAL AEIVEKLEGC EKEAEGLRKD RAEVEKRVRD LERKIGVLEV REMEEKSKKL RSEEEMREID DEKKREIEEL
201: QKTVIVLNLE LVKNVEELKK WKSKKKLTEE ALSETQKREK ELELKKDELL KKVEEGNKTV FALNERTMKP SNGVRDTNGG DQKGSLEAEY QWPVVAAGSV
301: GAAGLVAATF FVCYSKLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)