AT3G58830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : haloacid dehalogenase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
haloacid dehalogenase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Protein of unknown function DUF2010 (InterPro:IPR019001), HAD-superfamily phosphatase, subfamily IIIA (InterPro:IPR010021); Has 1169 Blast hits to 1165 proteins in 593 species: Archae - 0; Bacteria - 976; Metazoa - 0; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21755172..21756637 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38551.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASTTSYYP IPKSFLLSPP RHKRNPNLIS CSTKPICSPP PPSSSSSSPL QTTTTHRSQK QNLRLPTFED SFLLYQFSSP TEDPGFSNRI PEQFDGEPRE 101: LVLPRVEDNN KGLAISSNMW WADLKAALGQ RINIEGIVSS VSVVVKDRQF VLPHVSVKDL RYIDWEVLKR KGFKGVVFDK DNTLTAPYSL AIWPPLRPSI 201: ERCKAVFGHD IAVFSNSAGL TEYDHDDSKA KALEAEIGIR VLRHRVKKPA GTAEEVEKHF GCTSSELIMV GDRPFTDIVY GNRNGFLTVL TEPLSRAEEP 301: FIVRQVRRLE LALLKRWLRK GLKPVDHSLV SDITQFVKVP SDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)