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AT3G58830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : haloacid dehalogenase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
haloacid dehalogenase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Protein of unknown function DUF2010 (InterPro:IPR019001), HAD-superfamily phosphatase, subfamily IIIA (InterPro:IPR010021); Has 1169 Blast hits to 1165 proteins in 593 species: Archae - 0; Bacteria - 976; Metazoa - 0; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1011eggNOG:KOG2961EMBL:AK227892EMBL:BT004819EMBL:CP002686EnsemblPlants:AT3G58830EnsemblPlants:AT3G58830.1
entrez:825052Gene3D:3.40.50.1000GeneID:825052GO:GO:0016787Gramene:AT3G58830.1hmmpanther:PTHR19288hmmpanther:PTHR19288:SF25
InterPro:IPR006549InterPro:IPR010021InterPro:IPR023214InterPro:IPR027706KEGG:00564+3.1.3.27KEGG:ath:AT3G58830KO:K01094
OMA:YWYKKGHPfam:PF09419Proteomes:UP000006548RefSeq:NP_191442.2STRING:3702.AT3G58830.1SUPFAM:SSF56784TAIR:AT3G58830
TIGRfam:TIGR01662TIGRfam:TIGR01668TIGRFAMs:TIGR01662TIGRFAMs:TIGR01668unipathway:UPA00084UniProt:Q84VV0
Coordinates (TAIR10) chr3:-:21755172..21756637
Molecular Weight (calculated) 38551.20 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.34
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTTSYYP IPKSFLLSPP RHKRNPNLIS CSTKPICSPP PPSSSSSSPL QTTTTHRSQK QNLRLPTFED SFLLYQFSSP TEDPGFSNRI PEQFDGEPRE
101: LVLPRVEDNN KGLAISSNMW WADLKAALGQ RINIEGIVSS VSVVVKDRQF VLPHVSVKDL RYIDWEVLKR KGFKGVVFDK DNTLTAPYSL AIWPPLRPSI
201: ERCKAVFGHD IAVFSNSAGL TEYDHDDSKA KALEAEIGIR VLRHRVKKPA GTAEEVEKHF GCTSSELIMV GDRPFTDIVY GNRNGFLTVL TEPLSRAEEP
301: FIVRQVRRLE LALLKRWLRK GLKPVDHSLV SDITQFVKVP SDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)