suba logo
AT3G58780.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.
Computational
Description (TAIR10)
SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.1); Has 7265 Blast hits to 7263 proteins in 918 species: Archae - 0; Bacteria - 0; Metazoa - 648; Fungi - 306; Plants - 6235; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
EMBL:AY727622EMBL:AY727623EMBL:AY727624EMBL:AY727625EMBL:AY727626EMBL:AY727627EMBL:AY727628
EMBL:AY727629EMBL:AY727630EMBL:AY727631EMBL:AY727632EMBL:AY727633EMBL:AY727634EMBL:AY727635
EMBL:AY727636EMBL:AY727637EMBL:AY727638EMBL:AY727639EMBL:AY727640EMBL:AY727641EMBL:AY727642
EMBL:AY727643EMBL:AY727644EMBL:JQ973091EnsemblPlants:AT3G58780EnsemblPlants:AT3G58780.1entrez:825047ExpressionAtlas:Q5XXJ3
GeneID:825047GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G58780.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF150IntAct:Q5XXJ3InterPro:IPR002100InterPro:IPR002487ncoils:CoilPfam:P29381Pfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q5XXJ3PRINTS:PR00404PROSITE:PS00350PROSITE:PS50066
PROSITE:PS51297RefSeq:NP_191437.1scanprosite:PS00350SMART:SM00432SMR:Q5XXJ3SUPFAM:SSF55455TAIR:AT3G58780
tair10-symbols:AGL1tair10-symbols:SHP1UniGene:At.284UniGene:At.72589UniProt:P29381UniProt:Q5XXJ3
Coordinates (TAIR10) chr3:+:21739150..21741766
Molecular Weight (calculated) 28337.50 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.85
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)