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AT3G58740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : citrate synthase 1
Curator
Summary (TAIR10)
Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.
Computational
Description (TAIR10)
citrate synthase 1 (CSY1); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: fruit; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase active site (InterPro:IPR019810), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13123 Blast hits to 13123 proteins in 3164 species: Archae - 173; Bacteria - 8422; Metazoa - 267; Fungi - 318; Plants - 178; Viruses - 0; Other Eukaryotes - 3765 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G58740-MONOMERBioGrid:10358EC:2.3.3.16eggNOG:COG0372eggNOG:KOG2617EMBL:AL353032EMBL:AY099611
EMBL:BT002169EMBL:CP002686EnsemblPlants:AT3G58740EnsemblPlants:AT3G58740.1entrez:825043Gene3D:1.10.230.10Gene3D:1.10.580.10
GeneID:825043Genevisible:Q9LXS7GO:GO:0005777GO:GO:0006099GO:GO:0046912Gramene:AT3G58740.1gramene_pathway:2.3.3.1
gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWY-6549gramene_pathway:PWYQT-4481hmmpanther:PTHR11739hmmpanther:PTHR11739:SF4HOGENOM:HOG000021224
InParanoid:Q9LXS7IntAct:Q9LXS7InterPro:IPR002020InterPro:IPR016142InterPro:IPR016143InterPro:IPR019810InterPro:IPR024176
KEGG:ath:AT3G58740KO:K01647OMA:IDAYWTSPANTHER:PTHR11739PaxDb:Q9LXS7Pfam:PF00285Pfam:Q9LXS7
PhylomeDB:Q9LXS7PIR:T49157PIRSF:PIRSF001369PRIDE:Q9LXS7PRINTS:PR00143PRO:PR:Q9LXS7PROSITE:PS00480
ProteinModelPortal:Q9LXS7Proteomes:UP000006548RefSeq:NP_191433.1scanprosite:PS00480SMR:Q9LXS7STRING:3702.AT3G58740.1SUPFAM:SSF48256
TAIR:AT3G58740tair10-symbols:CSY1UniPathway:UPA00223UniProt:Q9LXS7
Coordinates (TAIR10) chr3:-:21721066..21723726
Molecular Weight (calculated) 52898.30 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.26
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISERARAR LAVLNAHLTV SEPNQVLPAI EPWCTSAHIT AAPHGSLKGN LKIVDERTGN EYQVPVSEHG TVKTVDLKKI TTGKDDKGLN LYDPGYLNTA
101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP
201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS
301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA
401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)