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AT3G58680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : multiprotein bridging factor 1B
Curator
Summary (TAIR10)
One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.
Computational
Description (TAIR10)
multiprotein bridging factor 1B (MBF1B); CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: multiprotein bridging factor 1A (TAIR:AT2G42680.1); Has 690 Blast hits to 690 proteins in 262 species: Archae - 53; Bacteria - 10; Metazoa - 194; Fungi - 151; Plants - 135; Viruses - 2; Other Eukaryotes - 145 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1813eggNOG:KOG3398EMBL:AF324717EMBL:AF326909EMBL:AF339728EMBL:AL353032EMBL:AY042850
EMBL:AY081487EMBL:AY084597EMBL:CP002686EnsemblPlants:AT3G58680EnsemblPlants:AT3G58680.1entrez:825037Gene3D:1.10.260.40
GeneID:825037Genevisible:Q9LXT3GO:GO:0003713GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006351
GO:GO:0043565GO:GO:0045893Gramene:AT3G58680.1hmmpanther:PTHR10245hmmpanther:PTHR10245:SF23HOGENOM:HOG000195726InParanoid:Q9LXT3
InterPro:IPR001387InterPro:IPR010982InterPro:IPR013729KEGG:ath:AT3G58680KO:K03627OMA:HISKMSQPaxDb:Q9LXT3
Pfam:PF01381Pfam:PF08523Pfam:Q9LXT3Pfscan:PS50943PhylomeDB:Q9LXT3PIR:T49151PRIDE:Q9LXT3
PRO:PR:Q9LXT3PROSITE:PS50943ProteinModelPortal:Q9LXT3Proteomes:UP000006548RefSeq:NP_191427.1SMART:SM00530SMR:Q9LXT3
STRING:3702.AT3G58680.1SUPFAM:SSF47413TAIR:AT3G58680tair10-symbols:ATMBF1Btair10-symbols:MBF1BUniProt:Q9LXT3
Coordinates (TAIR10) chr3:+:21707367..21708625
Molecular Weight (calculated) 15582.70 Da
IEP (calculated) 10.75
GRAVY (calculated) -0.82
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGIGPITQD WEPVVIRKRA PNAAAKRDEK TVNAARRSGA DIETVRKFNA GSNKAASSGT SLNTKKLDDD TENLSHDRVP TELKKAIMQA RGEKKLTQSQ
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)