AT3G58590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02330.1); Has 50517 Blast hits to 13015 proteins in 216 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 53; Plants - 49733; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21666262..21668487 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82694.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 741 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSCGDLAN HNDRVVSLLN VCRKAPSFAR TKALHALSIT LCSVLLQPVY VCNNIISLYE KLGEVSLAGK VFDQMPERNK VSFNTIIKGY SKYGDVDKAW 101: GVFSEMRYFG YLPNQSTVSG LLSCASLDVR AGTQLHGLSL KYGLFMADAF VGTCLLCLYG RLDLLEMAEQ VFEDMPFKSL ETWNHMMSLL GHRGFLKECM 201: FFFRELVRMG ASLTESSFLG VLKGVSCVKD LDISKQLHCS ATKKGLDCEI SVVNSLISAY GKCGNTHMAE RMFQDAGSWD IVSWNAIICA TAKSENPLKA 301: LKLFVSMPEH GFSPNQGTYV SVLGVSSLVQ LLSCGRQIHG MLIKNGCETG IVLGNALIDF YAKCGNLEDS RLCFDYIRDK NIVCWNALLS GYANKDGPIC 401: LSLFLQMLQM GFRPTEYTFS TALKSCCVTE LQQLHSVIVR MGYEDNDYVL SSLMRSYAKN QLMNDALLLL DWASGPTSVV PLNIVAGIYS RRGQYHESVK 501: LISTLEQPDT VSWNIAIAAC SRSDYHEEVI ELFKHMLQSN IRPDKYTFVS ILSLCSKLCD LTLGSSIHGL ITKTDFSCAD TFVCNVLIDM YGKCGSIRSV 601: MKVFEETREK NLITWTALIS CLGIHGYGQE ALEKFKETLS LGFKPDRVSF ISILTACRHG GMVKEGMGLF QKMKDYGVEP EMDHYRCAVD LLARNGYLKE 701: AEHLIREMPF PADAPVWRTF LDGCNRFAEE QRNTLNVVSF Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)