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AT3G58550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 502 Blast hits to 498 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX2QeggNOG:ENOG41104CNEMBL:AK119080EMBL:AL137082EMBL:BT003738EMBL:CP002686EnsemblPlants:AT3G58550
EnsemblPlants:AT3G58550.1entrez:825024GeneID:825024GO:GO:0008233GO:GO:0031225Gramene:AT3G58550.1hmmpanther:PTHR33044
hmmpanther:PTHR33044:SF10HOGENOM:HOG000005747InterPro:IPR016140KEGG:ath:AT3G58550OMA:PECCEDTPfam:PF14368PhylomeDB:Q9M2G1
PIR:T45675Proteomes:UP000006548RefSeq:NP_191414.1SMART:SM00499SMR:Q9M2G1STRING:3702.AT3G58550.1SUPFAM:SSF47699
TAIR:AT3G58550UniGene:At.34716UniGene:At.43214UniProt:Q9M2G1
Coordinates (TAIR10) chr3:-:21649506..21650233
Molecular Weight (calculated) 19292.50 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.04
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFMAYNQN PQMLALCITV AVMFLGVRSE LSQDIKGCQD AMSDLYSCLP FVTNKAKAPD STCCSTLKVK IDKGQTRKCL CTLVKDRDDP GLGFKVDANR
101: AMSLPSACHV PANISQCPDL LHLLPDSPAS QIFKQFTESS SQTVGHKAVS TSSSIKGRDN KQFGLMMAGA LSIWYIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)