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AT3G58530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.695
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 9313 Blast hits to 3891 proteins in 246 species: Archae - 0; Bacteria - 470; Metazoa - 3686; Fungi - 1044; Plants - 3046; Viruses - 9; Other Eukaryotes - 1058 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT1FeggNOG:ENOG410Z034EMBL:AL137082EMBL:AY054560EMBL:AY064636EMBL:AY087448EMBL:CP002686
EnsemblPlants:AT3G58530EnsemblPlants:AT3G58530.1entrez:825022Gene3D:3.80.10.10GeneID:825022Genevisible:Q8LB33GO:GO:0005829
Gramene:AT3G58530.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF440HOGENOM:HOG000030245InParanoid:Q8LB33InterPro:IPR001611InterPro:IPR006553
InterPro:IPR032675KEGG:ath:AT3G58530KO:K10268OMA:CIGIKRRPaxDb:Q8LB33Pfam:PF13516Pfam:Q8LB33
PhylomeDB:Q8LB33PIR:T45673PRIDE:Q8LB33PRO:PR:Q8LB33ProteinModelPortal:Q8LB33Proteomes:UP000006548RefSeq:NP_567069.1
SMART:SM00367SMR:Q8LB33STRING:3702.AT3G58530.1SUPFAM:SSF52047TAIR:AT3G58530UniGene:At.20154UniProt:Q8LB33
Coordinates (TAIR10) chr3:+:21645759..21648219
Molecular Weight (calculated) 39735.50 Da
IEP (calculated) 7.50
GRAVY (calculated) 0.06
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)