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AT3G58190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lateral organ boundaries-domain 29
Curator
Summary (TAIR10)
This gene contains two auxin-responsive element (AuxRE).
Computational
Description (TAIR10)
lateral organ boundaries-domain 29 (LBD29); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G42440.1); Has 858 Blast hits to 853 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 858; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10303eggNOG:ENOG410IWMUeggNOG:ENOG410YGW0EMBL:AB473849EMBL:AF447893EMBL:AL137081EMBL:BT025282
EMBL:CP002686EnsemblPlants:AT3G58190EnsemblPlants:AT3G58190.1entrez:824988GeneID:824988Genevisible:Q9M2J7GO:GO:0005634
GO:GO:0010311Gramene:AT3G58190.1hmmpanther:PTHR31529hmmpanther:PTHR31529:SF2HOGENOM:HOG000237548InParanoid:Q9M2J7InterPro:IPR004883
KEGG:ath:AT3G58190KO:K13945ncoils:CoilOMA:RRKCAKGPaxDb:Q9M2J7Pfam:PF03195Pfam:Q9M2J7
Pfscan:PS50891PhylomeDB:Q9M2J7PIR:T45979PRIDE:Q9M2J7PRO:PR:Q9M2J7PROSITE:PS50891Proteomes:UP000006548
RefSeq:NP_191378.1STRING:3702.AT3G58190.1TAIR:AT3G58190tair10-symbols:ASL16tair10-symbols:LBD29UniGene:At.27201UniGene:At.74020
UniProt:Q9M2J7
Coordinates (TAIR10) chr3:-:21548716..21549488
Molecular Weight (calculated) 24057.70 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.46
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)