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AT3G58140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phenylalanyl-tRNA synthetase class IIc family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phenylalanyl-tRNA synthetase class IIc family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, mitochondrial (InterPro:IPR004530), Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (InterPro:IPR005121), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (TAIR:AT4G39280.1); Has 12112 Blast hits to 12078 proteins in 3125 species: Archae - 246; Bacteria - 7816; Metazoa - 323; Fungi - 290; Plants - 111; Viruses - 0; Other Eukaryotes - 3326 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G58140-MONOMERBioGrid:10298EC:6.1.1.20eggNOG:COG0016
eggNOG:COG0072eggNOG:KOG2783EMBL:AF370247EMBL:AL137081
EMBL:AY063063EMBL:CP002686EnsemblPlants:AT3G58140EnsemblPlants:AT3G58140.1
entrez:824983Gene3D:3.30.70.380GeneID:824983Genevisible:Q94K73
GO:GO:0000049GO:GO:0000287GO:GO:0004826GO:GO:0005524
GO:GO:0005739GO:GO:0005759GO:GO:0006432GO:GO:0008033
GO:GO:0009507GO:GO:0009570GO:GO:0016020Gramene:AT3G58140.1
gramene_pathway:6.1.1.20gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR11538hmmpanther:PTHR11538:SF41
HOGENOM:HOG000165163InParanoid:Q94K73InterPro:IPR002319InterPro:IPR004530
InterPro:IPR005121InterPro:IPR006195KEGG:ath:AT3G58140KO:K01889
OMA:RIVYRHMPaxDb:Q94K73Pfam:PF01409Pfam:PF03147
Pfam:Q94K73Pfscan:PS50862Pfscan:PS51447PhylomeDB:Q94K73
PIR:T45974PRIDE:Q94K73PRO:PR:Q94K73PROSITE:PS50862
PROSITE:PS51447ProteinModelPortal:Q94K73Proteomes:UP000006548RefSeq:NP_567061.1
SMART:SM00896SMR:Q94K73STRING:3702.AT3G58140.1SUPFAM:0042524
SUPFAM:SSF54991SUPFAM:SSF55681TAIR:AT3G58140TIGRfam:TIGR00469
TIGRFAMs:TIGR00469UniGene:At.47904UniGene:At.56326UniProt:Q94K73
Coordinates (TAIR10) chr3:-:21529988..21532386
Molecular Weight (calculated) 49254.30 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.34
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVFSVQSTI FSRASVALLS SNGFKRFSFV SSFSSSAAYS PPKMRKRRYP IVSAVDIGGV AIARNDVVRE DDPTNNVPDS IFSKLGMQLH RRDKHPIGIL
101: KNAIYDYFDS NYSNKFEKFE DLSPIVTTKQ NFDDVLVPAD HVSRSLNDTY YVDSQTVLRC HTSAHQAELL RKGHSRFLVT GDVYRRDSID STHYPVFHQM
201: EGFCVFSPED WNGSGKDSTL YAAEDLKKCL EGLARHLFGS VEMRWVDTYF PFTNPSFELE IYFKEDWLEV LGCGVTEQVI LKQSGLENNV AWAFGLGLER
301: LAMVLFDIPD IRFFWSSDER FTSQFGKGEL GVKFKPYSKY PPCYKDISFW ISDLFTENNF CEVVRGIAGD LVEEVKLIDQ FTNKKKGLTS HCYRIVFRSM
401: ERSLTDEEVN DLQSKVRDEV QKKLNVELR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)