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AT3G58070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile‚Äďadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.
Computational
Description (TAIR10)
GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXEGeggNOG:ENOG410YP3TEMBL:AL132977EMBL:BT003340EMBL:BT009676EMBL:CP002686EnsemblPlants:AT3G58070
EnsemblPlants:AT3G58070.1entrez:824976GeneID:824976Genevisible:Q84WI0GO:GO:0003700GO:GO:0006351GO:GO:0006355
GO:GO:0007275GO:GO:0009739GO:GO:0010026GO:GO:0010091GO:GO:0046872Gramene:AT3G58070.1HOGENOM:HOG000239542
InParanoid:Q84WI0InterPro:IPR007087KEGG:ath:AT3G58070OMA:YRHYPSWPaxDb:Q84WI0Pfam:PF13912Pfam:Q84WI0
Pfscan:PS50157PhylomeDB:Q84WI0PIR:T46029PRO:PR:Q84WI0PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q84WI0
Proteomes:UP000006548RefSeq:NP_191366.1scanprosite:PS00028SMR:Q84WI0STRING:3702.AT3G58070.1SUPFAM:SSF57667TAIR:AT3G58070
tair10-symbols:GISUniGene:At.34767UniProt:Q84WI0
Coordinates (TAIR10) chr3:-:21506845..21507606
Molecular Weight (calculated) 28458.30 Da
IEP (calculated) 7.71
GRAVY (calculated) -1.06
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)