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AT3G58040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.678
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : seven in absentia of Arabidopsis 2
Curator
Summary (TAIR10)
Encodes a RING finger domain containing protein that interacts with AtRAP2.2.
Computational
Description (TAIR10)
seven in absentia of Arabidopsis 2 (SINAT2); FUNCTIONS IN: protein binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT2G41980.1); Has 1862 Blast hits to 1847 proteins in 701 species: Archae - 0; Bacteria - 0; Metazoa - 1276; Fungi - 4; Plants - 482; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-995-MONOMERBioGrid:10288EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002EMBL:AK229466EMBL:AL132977
EMBL:AY087768EMBL:BT025655EMBL:CP002686EnsemblPlants:AT3G58040EnsemblPlants:AT3G58040.1entrez:824973Gene3D:2.60.210.10
Gene3D:3.30.40.10Gene3D:3.90.890.10GeneID:824973Genevisible:Q9M2P4GO:GO:0005634GO:GO:0005737GO:GO:0007275
GO:GO:0008270GO:GO:0016874GO:GO:0042787GO:GO:0043161GO:GO:0061630hmmpanther:PTHR10315hmmpanther:PTHR10315:SF34
HOGENOM:HOG000231487InParanoid:Q9M2P4IntAct:Q9M2P4InterPro:IPR001841InterPro:IPR004162InterPro:IPR008974InterPro:IPR013010
InterPro:IPR013083InterPro:IPR013323InterPro:IPR018121KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT3G58040
KO:K04506OMA:GIHSNNGPANTHER:PTHR10315PaxDb:Q9M2P4Pfam:PF03145Pfam:Q9M2P4Pfscan:PS50089
Pfscan:PS51081PhylomeDB:Q9M2P4PIR:T46026PRIDE:Q9M2P4PRO:PR:Q9M2P4PROSITE:PS50089PROSITE:PS51081
ProteinModelPortal:Q9M2P4Proteomes:UP000006548RefSeq:NP_191363.1SMR:Q9M2P4STRING:3702.AT3G58040.1SUPFAM:SSF49599SUPFAM:SSF57850
TAIR:AT3G58040tair10-symbols:SINAT2UniGene:At.34771UniPathway:UPA00143UniProt:Q9M2P4
Coordinates (TAIR10) chr3:+:21489612..21491085
Molecular Weight (calculated) 34994.90 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.48
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)