AT3G57980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G42150.1); Has 5050 Blast hits to 3932 proteins in 403 species: Archae - 12; Bacteria - 304; Metazoa - 2409; Fungi - 569; Plants - 345; Viruses - 12; Other Eukaryotes - 1399 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21466919..21469148 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70251.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||||||||||||||
| Length | 632 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEELLLACAV HRHGTDSWDS VASEVHKQNS TFRTLTAIDC RHKYNDLKRR FSRNLVSPGS ADEETLAAEI SSVPWLEELR KLRVDELRRE VERYDLSISS 101: LQLKVKTLED EREKSLKTEN SDLDRIAETK ENHTESGNNS GVPVTELKNS PDPNDNSPGT GSENTNRAVK IAEPVDEEPN RIGGEDNDEK PAREDSGRGS 201: CESVAKESDR AEPKREGNDS PELVESMDES KGEEDTKETS DGQSSASFPR KETVDQDQPD NKDQSLTVNK IFVESQPLSD FIEILQSHPI GSHFSRRLET 301: QETSDYYRII RQHIDFEMIR SRVEEGYYKT ARTKFFRDLL LLINNVRVFY GEPSPEFNAA KQLYQLIKKQ MSFKIPKQTL PPPKEDALVT SKEEVKVSSL 401: KPTLSVPIIA CRKRSSLAVR SPASVTETLK KKTRVVPTVD EKQVSEEEEG RPSDKDEKPI VSKKMARGAA PSTAKKVGSR NVKTSLNAGI SNRGRSPNGS 501: SVLKKSVQQK KGINTSGGSK KQSAASFLKR MKGVSSSETV VETVKAESSN GKRGAEQRKS NSKSEKVDAV KLPAGQKRLT GKRPTIEKGS PTKKNSGVAS 601: KRGTASLMAK RDSETSEKET GSSTRPKKRS KR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)