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AT3G57930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 1519 Blast hits to 1241 proteins in 182 species: Archae - 0; Bacteria - 60; Metazoa - 576; Fungi - 133; Plants - 127; Viruses - 30; Other Eukaryotes - 593 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J341eggNOG:ENOG410YQWHEMBL:AL132977EMBL:BT004228EMBL:BT005705EMBL:CP002686EnsemblPlants:AT3G57930
EnsemblPlants:AT3G57930.1EnsemblPlants:AT3G57930.2entrez:824962GeneID:824962Gramene:AT3G57930.1Gramene:AT3G57930.2hmmpanther:PTHR34055
hmmpanther:PTHR34055:SF4HOGENOM:HOG000239421KEGG:ath:AT3G57930ncoils:CoilOMA:NKDVKNQPhylomeDB:Q9M2Q5PIR:T46015
Proteomes:UP000006548RefSeq:NP_001030881.1RefSeq:NP_191352.1TAIR:AT3G57930UniGene:At.34783UniProt:Q9M2Q5
Coordinates (TAIR10) chr3:-:21447250..21447675
Molecular Weight (calculated) 15841.10 Da
IEP (calculated) 9.15
GRAVY (calculated) -1.76
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRGRGKGKR QNATAREDRG SGEEEKIPAF RKRGRPQKPV KDEEEEEEEL VKKTDEEEDK DDDTNGSVTS KENVTENGRK RKKPVESKES NITEEENGVG
101: SKSSTEDSMK SSSSIGFRQN GSRRKNKPRR AAEAVVECNG V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)