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AT3G57920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 15
Curator
Summary (TAIR10)
Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 15 (SPL15); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, regulation of cell size, regulation of cell proliferation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 9 (TAIR:AT2G42200.1); Has 832 Blast hits to 831 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 829; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJWKeggNOG:ENOG410YVZEEMBL:AL132977EMBL:AY086384EMBL:CP002686EnsemblPlants:AT3G57920EnsemblPlants:AT3G57920.1
entrez:824961Gene3D:4.10.1100.10GeneID:824961Genevisible:Q9M2Q6GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008361GO:GO:0010228GO:GO:0042127GO:GO:0046872GO:GO:0048653
Gramene:AT3G57920.1hmmpanther:PTHR31251hmmpanther:PTHR31251:SF22HOGENOM:HOG000070804InParanoid:Q9M2Q6InterPro:IPR004333KEGG:ath:AT3G57920
OMA:MEPENTRPaxDb:Q9M2Q6Pfam:PF03110Pfam:Q9M2Q6Pfscan:PS51141PhylomeDB:Q9M2Q6PIR:T46014
PRIDE:Q9M2Q6PRO:PR:Q9M2Q6PROSITE:PS51141ProteinModelPortal:Q9M2Q6Proteomes:UP000006548RefSeq:NP_191351.1SMR:Q9M2Q6
STRING:3702.AT3G57920.1SUPFAM:SSF103612TAIR:AT3G57920tair10-symbols:SPL15UniGene:At.34784UniProt:Q9M2Q6
Coordinates (TAIR10) chr3:-:21444450..21445852
Molecular Weight (calculated) 39674.60 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.66
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)