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AT3G57870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sumo conjugation enzyme 1
Curator
Summary (TAIR10)
Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
Computational
Description (TAIR10)
sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G57870-MONOMERBioGrid:10271EC:6.3.2.-eggNOG:COG5078eggNOG:KOG0424EMBL:AF091106EMBL:AK229859
EMBL:AL132977EMBL:AY042838EMBL:BT003377EMBL:CP002686EMBL:U44976EnsemblPlants:AT3G57870EnsemblPlants:AT3G57870.1
entrez:824956Gene3D:3.10.110.10GeneID:824956Genevisible:Q42551GO:GO:0005524GO:GO:0005634GO:GO:0005737
GO:GO:0009737GO:GO:0009793GO:GO:0016874GO:GO:0016925GO:GO:0019789Gramene:AT3G57870.1hmmpanther:PTHR24067
hmmpanther:PTHR24067:SF112HOGENOM:HOG000233454InParanoid:Q42551IntAct:Q42551InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313
KEGG:ath:AT3G57870KO:K10577OMA:DLKRWECPaxDb:Q42551Pfam:PF00179Pfam:Q42551Pfscan:PS50127
PhylomeDB:Q42551PIR:T46009PRIDE:Q42551PRO:PR:Q42551PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q42551
Proteomes:UP000006548Reactome:R-ATH-3065678Reactome:R-ATH-3108214Reactome:R-ATH-4570464Reactome:R-ATH-4615885Reactome:R-ATH-5696395RefSeq:NP_191346.1
scanprosite:PS00183SMR:Q42551STRING:3702.AT3G57870.1SUPFAM:SSF54495TAIR:AT3G57870tair10-symbols:AHUS5tair10-symbols:ATSCE1
tair10-symbols:EMB1637tair10-symbols:SCE1tair10-symbols:SCE1AUniGene:At.21103UniGene:At.21178UniGene:At.75366unipathway:UPA00143
UniPathway:UPA00886UniProt:Q42551
Coordinates (TAIR10) chr3:-:21428831..21430110
Molecular Weight (calculated) 17986.50 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.52
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)