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AT3G57630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.495
plasma membrane 0.236
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 4457 Blast hits to 2809 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 2721; Fungi - 13; Plants - 998; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Protein Annotations
CAZy:GT47eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:BT011693EMBL:BT012627EMBL:CP002686EMBL:KJ138784
EnsemblPlants:AT3G57630EnsemblPlants:AT3G57630.1entrez:824932ExpressionAtlas:Q6NKR6GeneID:824932GO:GO:0016021GO:GO:0016740
Gramene:AT3G57630.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF21HOGENOM:HOG000030384InterPro:IPR000742InterPro:IPR004263InterPro:IPR013032
KEGG:ath:AT3G57630OMA:YDERNATPfam:PF03016Pfscan:PS50026PhylomeDB:Q6NKR6PROSITE:PS00022PROSITE:PS01186
PROSITE:PS50026Proteomes:UP000006548RefSeq:NP_191322.3scanprosite:PS00022scanprosite:PS01186STRING:3702.AT3G57630.1TAIR:AT3G57630
TMHMM:TMhelixUniGene:At.3192UniProt:Q6NKR6
Coordinates (TAIR10) chr3:-:21339543..21343080
Molecular Weight (calculated) 90936.20 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.52
Length 793 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSHQKWKFS WSQIATVASV IVLVSLVHLF LGPVVPSFDS ITVRQAQNLC GPSNESISQV TKNSSQSLVV VAFDRRFPAD SHGAVVYRNA SWKAEIGQWL
101: SSCDAVAKEV DIIEPIGGRK CMSDCSGQGV CNHEFGLCRC FHGFTGEDCS QKLRLDCNYE KTPEMPYGKW VVSICSRHCD TTRAMCFCGE GTKYPNRPVP
201: ESCGFQINSP TNPDEPKMTD WSKPDLDILT TNSSKQGWCN VDPEDAYAMK VKIKEECDCK YDCLWGRFCE IPVQCTCVNQ CSGHGKCRGG FCQCDKGWFG
301: TDCSIPSTLS TVGEWPQWLR PAHLEVPSEK NVPGNLINLS AVVKKKRPLI YIYDLPPDFN SLLIEGRHFK FECVNRIYDE RNATVWTDYL YGSQMAFYEN
401: ILATAHRTMN GEEADFFFVP VLDSCIINRA DDAPHINMQN HTGLRSSLTL EFYKRAYEHI VEKYPYWNRS AGRDHIWFFS WDEGACYAPK EIWNSMMLVH
501: WGNTNSKHNH STTAYFGDNW DDISDERRGD HPCFDPRKDL VIPAWKVPDP YSMRKNYWER PREKRKTLFY FNGNLGPAYE KGRPEDSYSM GIRQKLAEEF
601: GSSPNKEGKL GKQHAEDVIV TPLRSDNYHK DIANSIFCGA FPGDGWSGRM EDSILQGCVP VIIQDGIYLP YENMLNYESF AVRVNEDDIP NLINTLRGFS
701: EAEIQFRLGN VKELWQRFLF RDSILLEAER QKATYGHEED WAVQFSKLKH DDIFATIIQT LHFKLHNDPW RREQAVNRTK DYGLPQECLH KTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)