AT3G57620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.676 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : glyoxal oxidase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G14430.1); Has 876 Blast hits to 857 proteins in 171 species: Archae - 0; Bacteria - 347; Metazoa - 2; Fungi - 241; Plants - 265; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:21337564..21339207 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61029.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MINSKNTFIV ATTILCLSMA ILSEGQANPF LLQLDRWEML LPSIGISAMH MQLLHNGMVI MFDRTDFGTS NVSLPGGICR YDPTDTAEKF DCSAHSVLYD 101: VVSNTYRPLN VQTDTWCSSG AVLPNGTLVQ TGGYNDGERA ARMFSPCGYS DTCDWIEFPQ YLSQRRWYAT NQILPDGRII VVGGRRQFNY ELFPRHDSRS 201: RSSRLEFLRE TSDGSNENNL YPFIHLLPDG NLFVFANTRS IVFDYKKNRI VKEFPEIPGG DPRNYPSSGS SILFPLDDTN DANVEVEIMV CGGSPKGGFS 301: RGFTRATSTC GRLKLSDQSP SWEMETMPLP RVMGDMLLLP TGDVIIVNGA GAGTAGWEKA RDPIIQPVIY QPFDHLFTVM STPSRPRMYH SSAILLPDGR 401: VLVGGSNPHV YYNFTNVEYP TDLSLEAYSP PYLFFTSDPI RPKILLTSDK VLSYKRLFNV DFSIAQFLTV DLLSVRIVAP SFTTHSFAMN QRMVILKLLS 501: VTRDQLTNSY RVSALGPSTA EIAPPGYYMI FLVHAGIPSS AAWVQIE |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)