AT3G57570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 48 Blast hits to 42 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:21312598..21320105 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 122042.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||
| Length | 1092 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEELIRRSE PESLVSVTVA RFMSTLLSAR PKKLRESISR LTPDSQKGVS GSIDEALWFL EKCVIDAAER DEAMSEILVP IIEHTLRFKD SKHGNPAMIL 0101: LNWLFQDEVL FQAVSRNLSN IILRNEDRFL ALGWCLLIRR LVECEDTGDQ GFWHGIREKH SMFVEIVSSC VPHLLMIVRN GSILQDGYEV PSRLSLSAAD 0201: CLLSITGALA KRDNTLINRP KSPTITGSHQ PVALTPNISE KKKRPTSLPE DSNIETNCIL WNHMEDLTRL VQCLFAWNRK TRLLHAKGLS QVLKWLEELK 0301: EHHGGSQKEA GTEVSMGGAL LLSSCWKHYS VLLHMEDQKF SKISKELLEQ YLSGIKYYSE SYPQGCSDTK NGGIETQKFF LNCLCLLLGR FEGKKFESIL 0401: SEYGMKLVPI LLHQLRSNNE EISEGVVAIF KAVFFKLQSQ SGDSFSDTMC MDVVIPSLLH LLDERDGAAK AVSVLLADYC SKNAGNSCLS EILQRLASGT 0501: TVQRLNSLDV ISEVILMSKD SFPSHIPWKE IADCLLKCLD DEETCICKQT SELLKSIEPS FVLPNLVNLI YAPNGKVQSS ATETLLGVLK HHKEDFDVIC 0601: MLLTSLSNIQ ALDTAESNGH STEGLTFDSD RVLKLIPEWA RSVQNWNSLI GPLLDKMFLE PSNAIMVRFL SCISESLADT SDLVLPHVLS HMKKQNKVDA 0701: SFISRSDTKS SVDKTKSEKS LFDHLCPLLI LRLLPQRVFD DIDSSTIYGK FLSGDSVNDY QDIKFEDCQC IATFILERAF SKFEFEEVRK LSAELCGRLH 0801: PQVLFPTVLL QLEKATEIQD SLKIKACLFS ICTSLMVRGW ESLSHRVTPK IRKVLENILL WPSVEDEISK VQHGCIDCLA LMICAELQHL KSSKTSGGEK 0901: IRSTGKDTSG YSVLDYTIHC LIEDRSNCSS IPKLSTDILT CENPLPIPFR LCMANVIISA CQKNPESSKK TFARKALPPL IHSLKVISVP EVRAACIQVL 1001: FSATYHLKST LLPVSSDLLK LSLRFLEQGS EKEKLAGAKL MASLMASEDV ILENISEGLL EARSVLSKAS LSDPSRDVRE VCAKLLACIT PL |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)