suba logo
AT3G57540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G41870.1); Has 443 Blast hits to 443 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWQ7eggNOG:ENOG410YBQGEMBL:AY059900EMBL:BT001233
EMBL:CP002686EnsemblPlants:AT3G57540EnsemblPlants:AT3G57540.1entrez:824921
GeneID:824921Gramene:AT3G57540.1hmmpanther:PTHR31471hmmpanther:PTHR31471:SF14
HOGENOM:HOG000242201IntAct:Q93YN8InterPro:IPR005516KEGG:ath:AT3G57540
ncoils:CoilOMA:TRIGENDPfam:PF03763PhylomeDB:Q93YN8
Proteomes:UP000006548RefSeq:NP_567050.1STRING:3702.AT3G57540.1TAIR:AT3G57540
UniGene:At.62893UniProt:Q93YN8
Coordinates (TAIR10) chr3:-:21301623..21302924
Molecular Weight (calculated) 32869.00 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.94
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)