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AT3G57410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : villin 3
Curator
Summary (TAIR10)
Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.
Computational
Description (TAIR10)
villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink).
Protein Annotations
BioGrid:10224eggNOG:ENOG410XR0AeggNOG:KOG0443EMBL:AF081203EMBL:AK318626EMBL:AL133248EMBL:AL137080
EMBL:CP002686EnsemblPlants:AT3G57410EnsemblPlants:AT3G57410.1entrez:824908Gene3D:1.10.950.10Gene3D:3.40.20.10GeneID:824908
Genevisible:O81645GO:GO:0005737GO:GO:0005884GO:GO:0051014GO:GO:0051015GO:GO:0051017GO:GO:0051693
Gramene:AT3G57410.1hmmpanther:PTHR11977hmmpanther:PTHR11977:SF46HOGENOM:HOG000233631InParanoid:O81645InterPro:IPR003128InterPro:IPR007122
InterPro:IPR007123InterPro:IPR029006InterPro:IPR030009iPTMnet:O81645KEGG:ath:AT3G57410MINT:MINT-8060963OMA:ALYMISD
PANTHER:PTHR11977PANTHER:PTHR11977:SF46PaxDb:O81645Pfam:O81645Pfam:PF00626Pfam:PF02209Pfscan:PS51089
PIR:T50668PRIDE:O81645PRINTS:PR00597PRO:PR:O81645PROSITE:PS51089ProteinModelPortal:O81645Proteomes:UP000006548
RefSeq:NP_567048.1SMART:SM00153SMART:SM00262SMR:O81645STRING:3702.AT3G57410.1SUPFAM:SSF47050SUPFAM:SSF55753
TAIR:AT3G57410tair10-symbols:ATVLN3tair10-symbols:VLN3UniGene:At.22370UniProt:O81645
Coordinates (TAIR10) chr3:-:21243615..21249809
Molecular Weight (calculated) 106354.00 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.52
Length 965 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSTKVLDP AFQGVGQKPG TEIWRIENFE PVPVPKSEHG KFYMGDTYIV LQTTQNKGGA YLFDIHFWIG KDTSQDEAGT AAVKTVELDA ALGGRAVQYR
101: EIQGHESDKF LSYFKPCIIP LEGGVASGFK KPEEEEFETR LYTCKGKRAV HLKQVPFARS SLNHDDVFIL DTKEKIYQFN GANSNIQERA KALVVIQYLK
201: DKFHEGTSDV AIVDDGKLDT ESDSGEFWVL FGGFAPIARK VASEDEIIPE TTPPKLYSIA DGQVESIDGD LSKSMLENNK CYLLDCGSEI FIWVGRVTQV
301: EERKTAIQAA EDFVASENRP KATRITRVIQ GYEPHSFKSN FDSWPSGSAT PANEEGRGKV AALLKQQGVG LKGLSKSTPV NEDIPPLLEG GGKLEVWYID
401: ANSKTVLSKD HVGKLYSGDC YLVLYTYHSG ERKEDYFLCC WFGKNSNQED QETAVRLAST MTNSLKGRPV QARIFEGKEP PQFVALFQHM VVLKGGLSSG
501: YKNSMTEKGS SGETYTPESI ALIQVSGTGV HNNKALQVEA VATSLNSYDC FLLQSGTSMF LWVGNHSTHE QQELAAKVAE FLKPGTTIKH AKEGTESSSF
601: WFALGGKQNF TSKKVSSETV RDPHLFSFSF NRGKFQVEEI HNFDQDDLLT EEMHLLDTHA EVFVWVGQCV DPKEKQTAFE IGQRYINLAG SLEGLSPKVP
701: LYKITEGNEP CFFTTYFSWD STKATVQGNS YQKKAALLLG THHVVEDQSS SGNQGPRQRA AALAALTSAF NSSSGRTSSP SRDRSNGSQG GPRQRAEALA
801: ALTSAFNSSP SSKSPPRRSG LTSQASQRAA AVAALSQVLT AEKKKSPDTS PSAEAKDEKA FSEVEATEEA TEAKEEEEVS PAAEASAEEA KPKQDDSEVE
901: TTGVTFTYER LQAKSEKPVT GIDFKRREAY LSEVEFKTVF GMEKESFYKL PGWKQDLLKK KFNLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)