AT3G57270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta-1,3-glucanase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of glycosyl hydrolase family 17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
beta-1,3-glucanase 1 (BG1); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 2 (TAIR:AT3G57260.1); Has 2220 Blast hits to 2205 proteins in 171 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 67; Plants - 2133; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21191336..21193118 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37657.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 340 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLRFLASLT LLLGLFFVNT NPTGGQVGVC YGRNGNNLPS PAETIALFKQ KNIQRVRLYS PDHDVLAALR GSNIEVTLGL PNSYLQSVAS SQSQANAWVQ 101: TYVMNYANGV RFRYISVGNE VKISDSYAQF LVPAMENIDR AVLAAGLGGR IKVSTSVDMG VLRESYPPSK GSFRGDVMVV MEPIIRFLVS KNSPLLLNLY 201: TYFSYAGNVG QIRLDYALFT APSGIVSDPP RSYQNLFDAM LDAMYSALEK SGGASLEIVV AETGWPTGGG TDTNIENARI YNNNLIKHVK NGTPKRPGKE 301: IETYLFAIYD ENQKPTPPYV EKFWGLFYPN KQPKYDINFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)