suba logo
AT3G57080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic rpb5 RNA polymerase subunit family protein
Curator
Summary (TAIR10)
Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB5.
Computational
Description (TAIR10)
NRPE5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, D (TAIR:AT2G41340.1); Has 910 Blast hits to 910 proteins in 323 species: Archae - 199; Bacteria - 0; Metazoa - 157; Fungi - 216; Plants - 117; Viruses - 5; Other Eukaryotes - 216 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-66-MONOMERBioGrid:10191DIP:DIP-48680NeggNOG:COG2012
eggNOG:KOG3218EMBL:AK118958EMBL:AL138655EMBL:BT005410
EMBL:CP002686EnsemblPlants:AT3G57080EnsemblPlants:AT3G57080.1entrez:824875
Gene3D:3.40.1340.10Gene3D:3.90.940.20GeneID:824875Genevisible:Q9M1J2
GO:GO:0000419GO:GO:0003677GO:GO:0003899GO:GO:0006351
Gramene:AT3G57080.1hmmpanther:PTHR10535hmmpanther:PTHR10535:SF2InParanoid:Q9M1J2
InterPro:IPR000783InterPro:IPR005571InterPro:IPR014381KEGG:ath:AT3G57080
KO:K03013OMA:EESHRYYPaxDb:Q9M1J2Pfam:PF01191
Pfam:PF03871Pfam:Q9M1J2PhylomeDB:Q9M1J2PIR:T47768
PIRSF:PIRSF000747PRIDE:Q9M1J2PRO:PR:Q9M1J2ProDom:PD005155
ProteinModelPortal:Q9M1J2Proteomes:UP000006548RefSeq:NP_191267.1SMR:Q9M1J2
STRING:3702.AT3G57080.1SUPFAM:0036684SUPFAM:SSF53036SUPFAM:SSF55287
TAIR:AT3G57080tair10-symbols:NRPE5tair10-symbols:RPB5BUniGene:At.28133
UniProt:Q9M1J2
Coordinates (TAIR10) chr3:+:21125878..21127470
Molecular Weight (calculated) 25587.00 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.29
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)