AT3G57060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1); Has 13948 Blast hits to 8962 proteins in 742 species: Archae - 66; Bacteria - 1309; Metazoa - 5536; Fungi - 1705; Plants - 572; Viruses - 208; Other Eukaryotes - 4552 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21115078..21121051 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155683.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1396 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPPFVFPQI LRALEEDPED NHRLFAQNPV DVTSLRPSDL EEFVKGVSFD LSDRELFCVE DQDVFDRVYS LVRSFFSLPP SCKCNLVESL RSNLSVLLPN 0101: VDSISRSVQD QEDDVPIIDR ITSHRNALKI YTFFLLTVVM NEESHISSVE TTKVAARGRK KQIIQSWNWE PQRGRMLNLI ANSLEINLSL LFGSSDLDEN 0201: YLSFIVKNSF TLFENATILK DAETKDALCR IIGASATKYH YIVQSCASIM HLIHKYDFAV VHIADAVARA ESKYSDGTLA VTIIRDIGRT DPKAYVKDTA 0301: GADNVGRFLV ELADRLPKLM STNVGVLVPH FGGESYKIRN ALVGVLGKLV AKAFNDVEGD MSSKSLRLRT KQAMLEILLE RCRDVSAYTR SRVLQVWAEL 0401: CEEHSVSIGL WNEVASLSAG RLEDKSAIVR KSALNLLIMM LQHNPFGPQL RIASFEATLE QYKRKLNELE PTEHASKEST SDGESCNGDG EIDDLHLETT 0501: TKIHQDSLSD SCQPENGEEI SEKDVSVPDI GNVEQTKALI ASLEAGLRFS KCMSASMPIL VQLMASSSAT DVENAILLLM RCKQFQIDGA EACLRKILPL 0601: AFSQDKSIYE AVENAFISIY IRKNPVDTAK QLLNLAIDSN IGDQAALEFI VNALVSKGEI SSSTTSALWD FFCFNINGTT AEQSRGALSI LCMAAKSSPR 0701: ILGSHIQDII DIGFGRWAKV EPLLARTACT VIQRFSEEDR KKLLLSSGSR LFGILESLIT GNWLPENIYY ATADKAISAI YMIHPTPETL ASTIIKKSLS 0801: TVFDVVEQEE AQTDTENNKV DILTPVQVAK LSRFLFAVSH IAMNQLVYIE SCIQKIRRQK TKKDKPAAES QNTEENLEAT QENNGINAEL GLAASDDALL 0901: DTLAERAERE IVSGGSVEKN LIGECATFLS KLCRNFSLLQ KHPELQASAM LALCRFMIID ASFCESNLQL LFTVVENAPS EVVRSNCTLS LGDLAVRFPN 1001: LLEPWTENMY ARLRDASVSV RKNAVLVLSH LILNDMMKVK GYIYEMAICI EDDVERISSL AKLFFHELSK KGSNPIYNLL PDILGQLSNR NLERESFCNV 1101: MQFLIGSIKK DKQMEALVEK LCNRFSGVTD GKQWEYISYS LSLLTFTEKG IKKLIESFKS YEHALAEDLV TENFRSIINK GKKFAKPELK ACIEEFEEKI 1201: NKFHMEKKEQ EETARNAEVH REKTKTMESL AVLSKVKEEP VEEYDEGEGV SDSEIVDPSM EESGDNLVET ESEEEPSDSE EEPDSAQCGT AIPRYLNQKT 1301: SGDNLIETEP EEEQSDSEPD SAQCGTTNPR SLNRKTSGDN LIETESEEEQ SDSEEEPSDS EEEPDSAQCG EEGESESKST ESSSSIRRNL RSGSRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)