suba logo
AT3G57020.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent phosphotriesterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G57010.1); Has 1029 Blast hits to 1017 proteins in 197 species: Archae - 1; Bacteria - 199; Metazoa - 238; Fungi - 6; Plants - 476; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G57020-MONOMEReggNOG:COG3386eggNOG:KOG1520EMBL:AK317319EMBL:AL138655EMBL:AY039884EMBL:CP002686
EnsemblPlants:AT3G57020EnsemblPlants:AT3G57020.1EnsemblPlants:AT3G57020.2entrez:824869ExpressionAtlas:Q9M1J6Gene3D:2.120.10.30GeneID:824869
Genevisible:Q9M1J6GO:GO:0005773GO:GO:0005783GO:GO:0009058hmmpanther:PTHR10426hmmpanther:PTHR10426:SF24HOGENOM:HOG000223915
InParanoid:Q9M1J6InterPro:IPR004141InterPro:IPR011042InterPro:IPR018119KEGG:ath:AT3G57020OMA:TMAKTIPPANTHER:PTHR10426
PaxDb:Q9M1J6Pfam:PF03088Pfam:Q9M1J6PhylomeDB:Q9M1J6PIR:T47762PRIDE:Q9M1J6PRO:PR:Q9M1J6
ProteinModelPortal:Q9M1J6Proteomes:UP000006548RefSeq:NP_001030876.1RefSeq:NP_191261.1SMR:Q9M1J6STRING:3702.AT3G57020.1SUPFAM:SSF63829
TAIR:AT3G57020TMHMM:TMhelixUniGene:At.1061UniGene:At.67273UniGene:At.69547UniProt:Q9M1J6
Coordinates (TAIR10) chr3:-:21098515..21100303
Molecular Weight (calculated) 41460.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.19
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MPINQKIPTW FAVPAVFAVL SVISYQTLIV PENLEGAKNV LTMAKTIPIP VAGPESIEFD PKGEGPYAAV VDGRILKWRG DDLGWVDFAY TSPHRGNCSK
101: TEVVPTCGRP LGLTFEKKTG DLYICDGYLG LMKVGPEGGL AELIVDEAEG RKVMFANQGD IDEEEDVFYF NDSSDKYHFR DVFFVAVSGE RSGRVIRYDK
201: KTKEAKVIMD NLVCNNGLAL NKDRSFLITC ESGTSLVHRY WIKGPKAGTR DIFAKVPGYP DNIRLTSTGD FWIGLHCKKN LIGRLIVKYK WLGKLVEKTM
301: KLEYVIAFIN GFKPHGVAVK ISGETGEVLE LLEDKEGKTM KYVSEAYERD DGKLWFGSVY WPAVWVLDRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)