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AT3G57000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.656
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleolar essential protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1756eggNOG:KOG3073EMBL:AK227852EMBL:AL138655EMBL:BT004815EMBL:CP002686EnsemblPlants:AT3G57000
EnsemblPlants:AT3G57000.1entrez:824867GeneID:824867GO:GO:0008168Gramene:AT3G57000.1hmmpanther:PTHR12636hmmpanther:PTHR12636:SF5
InterPro:IPR005304InterPro:IPR029028KEGG:ath:AT3G57000KO:K14568ncoils:CoilOMA:KIDSAYTPANTHER:PTHR12636
Pfam:PF03587PhylomeDB:Q9M1J8PIR:T47760Proteomes:UP000006548RefSeq:NP_191259.1SMR:Q9M1J8STRING:3702.AT3G57000.1
SUPFAM:SSF75217TAIR:AT3G57000UniGene:At.43946UniProt:Q9M1J8
Coordinates (TAIR10) chr3:+:21092610..21094109
Molecular Weight (calculated) 33831.50 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.54
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRPYGIKVN KRKEREERYD KEEDEVEEQP KFEQKQKARE SSKKAKKEST SRAEEDNDEE EVTVEATAAA EDIVGGIPIV LNAPNKEKSG IVFVLEKASL
101: EVAKVGKTYQ LLNSDDHANF LKKNNRNPAD YRPDITHQAL LMILDSPVNK AGRLKAVYVR TEKGVLFEVK PHVRIPRTFK RFAGIMLQLL QKLSITAVNS
201: REKLLRCVKN PIEEHHLPVN SHRIGFSHSS EKLVNMQKHL ATVCDDDRDT VFVVGAMAHG KIDCNYIDEF VSVSEYPLSA AYCISRICEA LATNWNII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)