AT3G56990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo sac development arrest 7 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21088358..21091976 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79671.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||
| Length | 711 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSYGDRLKS TSINGVKLYN VSSAPNVPTW LNPKKQRALR KNPHYMQRVE LIQELKFETA TTRIKATPDG EYLIASGIYP PQVKVYELNQ LALKFERHLD 101: SEIVDFEILD DDFSKLAFLC ADRSINLHAK YGKHHTLRIP RMGRDMTYDS WSCDLLCAAS SPDLYRINLE QGRFLSPLST QSPALNVVSR SNLHGLVACG 201: GEDGAVEFFD MRMKSSAARI NAVTHGGDAA AEVTAIEFDD SEGLQVAVGS SAGKVFIYDL RTSTPIRVKD HMYESPILNI KWQRTLNTQQ PKLITTDKHI 301: VRIWDPNTGE GMTSIEPTQG GINDICVFRG SGLMLLALDS SLIPSYFIPE LGPAPKWCSP LENLTEELEE SAQTTIYDNY KFLAMEDLEK LQLTHLIGTD 401: LLKASMHGYF INYHLYKKAL AVIEPFAFDD YLERRKQEKL EEQRTQRITK KRRLPKVNRD LAARLHGDES EEENKTAEDG EATKKVLKKK KPILTDEHFV 501: DGRFGSMFQN PDFQIDKDSY EYGVLHPVAS SKKQPSLLDE HFEAVSDDDE NSDSDASQPS DDEADDGDAT RPSKKARTPK LYEVKDERHA AAYHNRTSLA 601: KEDSLPMGER VKAIENRRGN FGGSKDIKFG PGGSREFSFK ARGSSKYKED RDDEYEDGQR NKRRGVQSLG LKSTNIRGGF RGRGGGGFRG RGGGGSRGKG 701: GRGGGRGRGR Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)