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AT3G56910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid-specific 50S ribosomal protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid-specific 50S ribosomal protein 5 (PSRP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10174eggNOG:ENOG410J3ZVeggNOG:ENOG410ZGCPEMBL:AL390921EMBL:AY042882EMBL:BT014859EMBL:CP002686
EnsemblPlants:AT3G56910EnsemblPlants:AT3G56910.1entrez:824858GeneID:824858Genevisible:Q9LER7GO:GO:0005840GO:GO:0009507
GO:GO:0009535GO:GO:0009579GO:GO:0009941GO:GO:0032544GO:GO:0080158Gramene:AT3G56910.1hmmpanther:PTHR34678
hmmpanther:PTHR34678:SF1HOGENOM:HOG000237771InParanoid:Q9LER7KEGG:ath:AT3G56910KO:K19034OMA:MALLCFNPaxDb:Q9LER7
Pfam:Q9LER7PIR:T51279PRIDE:Q9LER7PRO:PR:Q9LER7Proteomes:UP000006548RefSeq:NP_191250.1STRING:3702.AT3G56910.1
TAIR:AT3G56910tair10-symbols:PSRP5UniGene:At.34886UniGene:At.71107UniProt:Q9LER7
Coordinates (TAIR10) chr3:-:21069558..21070257
Molecular Weight (calculated) 16362.30 Da
IEP (calculated) 11.57
GRAVY (calculated) -0.47
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLCFNSLP SLSSLSSSSS SRLLQSPSFA SPVLSLKPNA VESKNRVSLS AYSLNSSHGR IVVKAAASGV DGAEPESKEE PKTVVAAVPV DKLPLESKEA
101: KEKLLLELRL KMKLAKKIRL RRKRLVRKRK MRKKGRWPPS KMKKNKNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)