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AT3G56880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: calmodulin (CAM)-binding protein of 25 kDa (TAIR:AT2G41010.1); Has 109 Blast hits to 109 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:824855eggNOG:ENOG410J156eggNOG:ENOG410YN0GEMBL:AL390921
EMBL:AY045980EMBL:BT000977EMBL:CP002686EnsemblPlants:AT3G56880
EnsemblPlants:AT3G56880.1entrez:824855GeneID:824855Gramene:AT3G56880.1
hmmpanther:PTHR33179hmmpanther:PTHR33179:SF9HOGENOM:HOG000090723IntAct:Q9LES0
InterPro:IPR008889KEGG:ath:AT3G56880OMA:HQENIITPfam:PF05678
PhylomeDB:Q9LES0PIR:T51276Proteomes:UP000006548RefSeq:NP_191247.1
STRING:3702.AT3G56880.1TAIR:AT3G56880UniGene:At.23094UniGene:At.73992
UniProt:Q9LES0
Coordinates (TAIR10) chr3:+:21060044..21060781
Molecular Weight (calculated) 25964.00 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.37
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSEGLASV DPWSFRQNFN IDSWLLSDSF SHDSDILAKA LHRSISTSTE SSPLSPSSFF DSSTAAVDFS PPQTLSNVSF GSDPEIPAAS ALGLGKRKRG
101: PGVSGGKQTK RRSRVSNKKS QTTFITADAA NFRQMVQQVT GAKFLGSSNS IFAPIVKPEP HRLASRLPPS CGNLDRSSAV PTLDTSSFLS NHHQENIITD
201: LGAPTGSFHH QSSAGTTTAN VGGGSSAVEL DSYPSFPTLE SWKVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)