AT3G56830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF565) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar in sequence to NPQ6 and NPQ7, but loss of function mutant does not exhibit a nonphotochemical quenching phenotype. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF565); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF565) (TAIR:AT1G65420.1); Has 152 Blast hits to 152 proteins in 43 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21042755..21043840 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25796.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||
| Length | 230 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFAITVTLP NCGSKFLPKR SFRDKGALSL AICSLCHFLH PAQPLLVRHQ RRMSWTTIKS SVGGDRFDPA SGSSSNNSSR GLRLIKAIQV LRSKLLVKIQ 101: EIKKDLPKKL FFLLVGFYSA TAFSTFIGQT GDWDVLSAGL AVLVVECIGA LMYRASIPLI NKMRSTITMF NYWKTGLALG LFLDSFKYEV YERKFISFCL 201: YALVMVPVNE KCENPFDWTQ VLAWTSEKAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)