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AT3G56720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 6239 Blast hits to 4635 proteins in 365 species: Archae - 6; Bacteria - 230; Metazoa - 3389; Fungi - 659; Plants - 656; Viruses - 13; Other Eukaryotes - 1286 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW4XeggNOG:ENOG410XWT0EMBL:BT029550EMBL:CP002686EnsemblPlants:AT3G56720EnsemblPlants:AT3G56720.1entrez:824839
ExpressionAtlas:A1A6N0GeneID:824839Gramene:AT3G56720.1hmmpanther:PTHR22426HOGENOM:HOG000116620IntAct:A1A6N0InterPro:IPR028124
InterPro:IPR028125ncoils:CoilPANTHER:PTHR22426Pfam:PF15477PhylomeDB:A1A6N0Proteomes:UP000006548RefSeq:NP_191231.2
STRING:3702.AT3G56720.3TAIR:AT3G56720UniGene:At.9833UniProt:A1A6N0
Coordinates (TAIR10) chr3:+:21011354..21013264
Molecular Weight (calculated) 43998.10 Da
IEP (calculated) 9.97
GRAVY (calculated) -1.58
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTELNSPPH DDGGDTTTAF RKPSNDGTSR KYRRRALADD GSSSSDGSPE RNQSPNPKHS RKDSEPVHVR KEDRWESDRS RYGRGGVDSH RHDRYSRDDN
101: YGYKRDEYNR HGRDARSTSR DSRGGRHSDR RRVETEYSRL RNDSDRSSHD KYSNSGHRVK SNEKGEDLSS GRRHSDSRVE DNEKRGSRWG FGDRHSRVER
201: KEHEDPEISK EKEVHVKSSR DRSDGKCLAT EDRDTHSKKL KGFISDKFTT GNTNEEKQTS ILKPSPGDVD AAKVAAMQAA ELVNKNLVGT GYLTTDQKKK
301: LLWGKKKSTA SEESAHRWDN ASALIGDPER QEKFNKLMGV KAKVVNQEQN LGEVEAEKQK ELQMDLEKQY TAGLRRRDGR TVGLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)