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AT3G56710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sigma factor binding protein 1
Curator
Summary (TAIR10)
Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.
Computational
Description (TAIR10)
sigma factor binding protein 1 (SIB1); CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G41180.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10154eggNOG:ENOG410J6K9eggNOG:ENOG410ZFI0EMBL:AF224762EMBL:AL390921EMBL:AY042831EMBL:BT002607
EMBL:CP002686EnsemblPlants:AT3G56710EnsemblPlants:AT3G56710.1entrez:824838GeneID:824838Genevisible:Q9LDH1GO:GO:0005634
GO:GO:0009507GO:GO:0009816GO:GO:0051091GO:GO:0071482Gramene:AT3G56710.1hmmpanther:PTHR33624hmmpanther:PTHR33624:SF2
HOGENOM:HOG000115137InParanoid:Q9LDH1IntAct:Q9LDH1InterPro:IPR008889KEGG:ath:AT3G56710OMA:QTCASKFPaxDb:Q9LDH1
Pfam:PF05678Pfam:Q9LDH1PhylomeDB:Q9LDH1PIR:T51259PRO:PR:Q9LDH1Proteomes:UP000006548RefSeq:NP_191230.1
STRING:3702.AT3G56710.1TAIR:AT3G56710tair10-symbols:SIB1UniGene:At.9832UniProt:Q9LDH1
Coordinates (TAIR10) chr3:-:21007053..21007508
Molecular Weight (calculated) 16862.60 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.77
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSSSTFLT TTSLDKKKPS PVSRKSPKQK KKTTSTNKPI KVRYISNPMR VQTCASKFRE LVQELTGQDA VDLQPEPIYS PSSDDHNLSP PAENLAPRVL
101: HQEPFGERDS DCYEPLNAED MFLPDQMSAG FSGFFSNGFY NVNDFGSIDS M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)