AT3G56660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : basic region/leucine zipper motif protein 49 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
basic region/leucine zipper motif protein 49 (BZIP49); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G40950.1); Has 954 Blast hits to 954 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 142; Plants - 326; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:20986217..20988213 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68187.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 620 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEPVLEDTY LTFSSDFDYI AIAPSPFDNF CNSNSDQVRN SISDLRFLID DDDSFDDLYF PSENESFCIP PDATKREMSG DFTPASGISG DCVNEDTEKN 101: TNGVLISTSS CYNRESPTDS DFSGTSQSLS FSGQDSAKRK TEIEEDSSDE SRRLGKDGFA SVIKVGGEED DEKKKNVRLV RNRESAHLSR QRKKHYVEEL 201: EDKVKNMHST ISELSSKMSY FVAENVTLRQ QMGTRFSSGP PMVPIVYPWM QYPAYMVKPQ GSQVALLPIP RLKPKHSVAK VKKFKKVASF SVFGFLFCMF 301: LFGALVNISY GEYKSNYVTD GVYDQSRGRV LVVDSSRVHC GGDSDQGVGR NVSETENLGP PRNSSEPLVA SLFVPRNEKL VKIDGNLIIH SVLASEKARD 401: SETKNEEGKS VLATTTKTLS PALPLPDSTS PRTRDVSKHL YSETGKGLSS SGSDDASNDQ LKSTIANGKM QQWFREGVAG PMFSSGMCTE VFQFDVSSNS 501: GAIIPASPHT QQCKNTSDTQ KGKKNRRILS GGLPVSDFNL TKEDHNSSSK DKFRETKPGP SMVVSVLVDP REGGNGDIDG MMGGTKPQSR VFIVVLVDGV 601: KYITYSCVLP RPDVPHLMTS |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)