AT3G56550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 30639 Blast hits to 12981 proteins in 201 species: Archae - 0; Bacteria - 4; Metazoa - 34; Fungi - 22; Plants - 30256; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:20952896..20954641 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64890.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 581 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCEKARVIVR MLQGCNSMKK LRKIHSHVII NGLQHHPSIF NHLLRFCAVS VTGSLSHAQL LFDHFDSDPS TSDWNYLIRG FSNSSSPLNS ILFYNRMLLS 101: SVSRPDLFTF NFALKSCERI KSIPKCLEIH GSVIRSGFLD DAIVATSLVR CYSANGSVEI ASKVFDEMPV RDLVSWNVMI CCFSHVGLHN QALSMYKRMG 201: NEGVCGDSYT LVALLSSCAH VSALNMGVML HRIACDIRCE SCVFVSNALI DMYAKCGSLE NAIGVFNGMR KRDVLTWNSM IIGYGVHGHG VEAISFFRKM 301: VASGVRPNAI TFLGLLLGCS HQGLVKEGVE HFEIMSSQFH LTPNVKHYGC MVDLYGRAGQ LENSLEMIYA SSCHEDPVLW RTLLGSCKIH RNLELGEVAM 401: KKLVQLEAFN AGDYVLMTSI YSAANDAQAF ASMRKLIRSH DLQTVPGWSW IEIGDQVHKF VVDDKMHPES AVIYSELGEV INRAILAGYK PEDSNRTAPT 501: LSDRCLGSAD TSHSEKLAIA YGLMRTTAGT TLRITKNLRV CRDCHSFTKY VSKAFNREII VRDRVRFHHF ADGICSCNDY W |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)