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AT3G56550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 30639 Blast hits to 12981 proteins in 201 species: Archae - 0; Bacteria - 4; Metazoa - 34; Fungi - 22; Plants - 30256; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL163972EMBL:CP002686EMBL:DQ446769EnsemblPlants:AT3G56550EnsemblPlants:AT3G56550.1
entrez:824822GeneID:824822Genevisible:Q9LXY5GO:GO:0008270Gramene:AT3G56550.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF712
HOGENOM:HOG000237569InParanoid:Q9LXY5InterPro:IPR002885InterPro:IPR032867KEGG:ath:AT3G56550OMA:CSHQGLVPaxDb:Q9LXY5
Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9LXY5Pfscan:PS51375PhylomeDB:Q9LXY5PIR:T49056
PRIDE:Q9LXY5PRO:PR:Q9LXY5PROSITE:PS51375ProteinModelPortal:Q9LXY5Proteomes:UP000006548RefSeq:NP_191214.1SMR:Q9LXY5
STRING:3702.AT3G56550.1TAIR:AT3G56550TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65282UniProt:Q9LXY5
Coordinates (TAIR10) chr3:-:20952896..20954641
Molecular Weight (calculated) 64890.60 Da
IEP (calculated) 8.07
GRAVY (calculated) 0.04
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MCEKARVIVR MLQGCNSMKK LRKIHSHVII NGLQHHPSIF NHLLRFCAVS VTGSLSHAQL LFDHFDSDPS TSDWNYLIRG FSNSSSPLNS ILFYNRMLLS
101: SVSRPDLFTF NFALKSCERI KSIPKCLEIH GSVIRSGFLD DAIVATSLVR CYSANGSVEI ASKVFDEMPV RDLVSWNVMI CCFSHVGLHN QALSMYKRMG
201: NEGVCGDSYT LVALLSSCAH VSALNMGVML HRIACDIRCE SCVFVSNALI DMYAKCGSLE NAIGVFNGMR KRDVLTWNSM IIGYGVHGHG VEAISFFRKM
301: VASGVRPNAI TFLGLLLGCS HQGLVKEGVE HFEIMSSQFH LTPNVKHYGC MVDLYGRAGQ LENSLEMIYA SSCHEDPVLW RTLLGSCKIH RNLELGEVAM
401: KKLVQLEAFN AGDYVLMTSI YSAANDAQAF ASMRKLIRSH DLQTVPGWSW IEIGDQVHKF VVDDKMHPES AVIYSELGEV INRAILAGYK PEDSNRTAPT
501: LSDRCLGSAD TSHSEKLAIA YGLMRTTAGT TLRITKNLRV CRDCHSFTKY VSKAFNREII VRDRVRFHHF ADGICSCNDY W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)