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AT3G56510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 528 Blast hits to 522 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 211; Fungi - 183; Plants - 47; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JJVeggNOG:KOG3152EMBL:AK228191EMBL:BT010761EMBL:BT011791EMBL:CP002686EnsemblPlants:AT3G56510
EnsemblPlants:AT3G56510.1EnsemblPlants:AT3G56510.2entrez:824818Gene3D:3.30.70.330GeneID:824818GO:GO:0000166GO:GO:0003676
Gramene:AT3G56510.1Gramene:AT3G56510.2hmmpanther:PTHR12311HOGENOM:HOG000242500InterPro:IPR012677KEGG:ath:AT3G56510KO:K14785
OMA:SIENETSPhylomeDB:Q6NM71PRO:PR:Q6NM71Proteomes:UP000006548RefSeq:NP_001030873.1RefSeq:NP_191210.2STRING:3702.AT3G56510.1
SUPFAM:SSF54928TAIR:AT3G56510UniGene:At.34931UniProt:Q6NM71
Coordinates (TAIR10) chr3:-:20944348..20946235
Molecular Weight (calculated) 29518.30 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.89
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSEESHELT DGISEEKESK ETMKSQKADR KKKKLKEKLL KEASKADNRG VCYLSRIPPH MDHVRLRHIL AQYGELGRIY LAPEDSEAQV HRKRAGGFRG
101: QRFSEGWVEF AKKSVAKRVA DMLNGEQIGG KKKSSVYYDI WNIKYLTKFK WDDLTEEIAY KSAIREQKLN MVLSAAKREK DFYLSKIEKS RAMTEIDARM
201: EKKRKIQEES GSNAEAAPVF PPRAIFQFRQ KKSIENETSQ SKPGLSTDFL ASVFGGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)