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AT3G56460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GroES-like zinc-binding alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 42737 Blast hits to 42567 proteins in 2748 species: Archae - 582; Bacteria - 27121; Metazoa - 1964; Fungi - 3760; Plants - 1452; Viruses - 3; Other Eukaryotes - 7855 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1848-MONOMEReggNOG:COG0604eggNOG:KOG1198EMBL:AK221446EMBL:AL163972EMBL:BT000937EMBL:CP002686
EnsemblPlants:AT3G56460EnsemblPlants:AT3G56460.1entrez:824813Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:824813GO:GO:0005777
GO:GO:0008270GO:GO:0016491Gramene:AT3G56460.1gramene_plant_reactome:1119309gramene_plant_reactome:6873988hmmpanther:PTHR11695hmmpanther:PTHR11695:SF31
HOGENOM:HOG000294672IntAct:Q9LXZ4InterPro:IPR002085InterPro:IPR002364InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154
InterPro:IPR016040InterPro:IPR020843KEGG:ath:AT3G56460OMA:FWGEFARPANTHER:PTHR11695Pfam:PF00107Pfam:PF08240
PhylomeDB:Q9LXZ4PIR:T49047PROSITE:PS01162Proteomes:UP000006548RefSeq:NP_191205.1scanprosite:PS01162SMART:SM00829
SMR:Q9LXZ4STRING:3702.AT3G56460.1SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT3G56460UniGene:At.20516UniGene:At.66483
UniProt:Q9LXZ4
Coordinates (TAIR10) chr3:-:20933029..20934425
Molecular Weight (calculated) 37267.70 Da
IEP (calculated) 9.74
GRAVY (calculated) 0.26
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALVCRKLG DPTATNPGSP ESPVEVSKTH PIPSLNSDTS VRVRVIATSL NYANYLQILG KYQEKPPLPF IPGSDYSGIV DAIGPAVTKF RVGDRVCSFA
101: DLGSFAQFIV ADQSRLFLVP ERCDMVAAAA LPVAFGTSHV ALVHRARLTS GQVLLVLGAA GGVGLAAVQI GKVCGAIVIA VARGTEKIQL LKSMGVDHVV
201: DLGTENVISS VKEFIKTRKL KGVDVLYDPV GGKLTKESMK VLKWGAQILV IGFASGEIPV IPANIALVKN WTVHGLYWGS YRIHQPNVLE DSIKELLSWL
301: SRGLITIHIS HTYSLSQANL AFGDLKDRKA IGKVMIALDH KTALSSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)