suba logo
AT3G56330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N2,N2-dimethylguanosine tRNA methyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT5G15810.1); Has 951 Blast hits to 937 proteins in 347 species: Archae - 257; Bacteria - 66; Metazoa - 191; Fungi - 140; Plants - 103; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56330-MONOMEReggNOG:COG1867eggNOG:KOG1253EMBL:AL163763EMBL:CP002686EnsemblPlants:AT3G56330EnsemblPlants:AT3G56330.1
entrez:824800Gene3D:3.40.50.150GeneID:824800GO:GO:0003723GO:GO:0004809GO:GO:0009536Gramene:AT3G56330.1
hmmpanther:PTHR10631hmmpanther:PTHR10631:SF2HOGENOM:HOG000233966InterPro:IPR002905InterPro:IPR029063KEGG:ath:AT3G56330KO:K00555
OMA:HEDANVLPANTHER:PTHR10631Pfam:PF02005Pfscan:PS51626PhylomeDB:Q9LYL0PIR:T47750PROSITE:PS51626
Proteomes:UP000006548RefSeq:NP_191192.1SMR:Q9LYL0STRING:3702.AT3G56330.1SUPFAM:SSF53335TAIR:AT3G56330UniGene:At.5075
UniProt:Q9LYL0
Coordinates (TAIR10) chr3:+:20890250..20891933
Molecular Weight (calculated) 48475.30 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.24
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLTLSPKTL SSSSFFTVHK SQNPKCKSPD SCRFKSLKCS FDRILVKSEV QIERNLEFET GETFFRHESA RGRDLGVLSA TLYKRSNGSL RVLDAMCGCG
101: IRSLRYLVEA EADFVMANDA NDDNRRVITD NLSKVERGTG DERRWVVTHM LANKAMIERY MVADFFDMID IDSFGSDSSF LRDAFNALRL GGLLYLTSTD
201: GYSSGGHRPY NSLAAYGAFI RPMPFGNEIG LRMLIGGAVR EAALLGYHVT PLFSYYSYHG PVFRVMLRVH RGKLHEDRNY GFVTHCNLCG HSHTLRFDEL
301: GLMGCPCSDT KASSSLVVSG PMWLGPLHDA SYVTEMLELA KEWGWVSEGT GMDLDKLLSI MIEESDPRLP PGYTKMDEMA SRAKMNSPPL KKMMSALVKE
401: GYAASRSHII PNALKTDCPM SHFVRIAKEN LHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)