AT3G56330.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : N2,N2-dimethylguanosine tRNA methyltransferase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT5G15810.1); Has 951 Blast hits to 937 proteins in 347 species: Archae - 257; Bacteria - 66; Metazoa - 191; Fungi - 140; Plants - 103; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20890250..20891933 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48475.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLTLSPKTL SSSSFFTVHK SQNPKCKSPD SCRFKSLKCS FDRILVKSEV QIERNLEFET GETFFRHESA RGRDLGVLSA TLYKRSNGSL RVLDAMCGCG 101: IRSLRYLVEA EADFVMANDA NDDNRRVITD NLSKVERGTG DERRWVVTHM LANKAMIERY MVADFFDMID IDSFGSDSSF LRDAFNALRL GGLLYLTSTD 201: GYSSGGHRPY NSLAAYGAFI RPMPFGNEIG LRMLIGGAVR EAALLGYHVT PLFSYYSYHG PVFRVMLRVH RGKLHEDRNY GFVTHCNLCG HSHTLRFDEL 301: GLMGCPCSDT KASSSLVVSG PMWLGPLHDA SYVTEMLELA KEWGWVSEGT GMDLDKLLSI MIEESDPRLP PGYTKMDEMA SRAKMNSPPL KKMMSALVKE 401: GYAASRSHII PNALKTDCPM SHFVRIAKEN LHS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)