suba logo
AT3G56310.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : vacuole 15215502
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Melibiase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1574 Blast hits to 1565 proteins in 338 species: Archae - 4; Bacteria - 582; Metazoa - 329; Fungi - 273; Plants - 224; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56310-MONOMERCAZy:GH27EC:3.2.1.22eggNOG:ENOG410XPF1eggNOG:KOG2366EMBL:AL163763EMBL:AY074321
EMBL:AY114020EMBL:CP002686EnsemblPlants:AT3G56310EnsemblPlants:AT3G56310.1EnsemblPlants:AT3G56310.2entrez:824798ExpressionAtlas:Q8VXZ7
Gene3D:2.60.40.1180Gene3D:3.20.20.70GeneID:824798Genevisible:Q8VXZ7GO:GO:0005618GO:GO:0005773GO:GO:0005975
GO:GO:0048046GO:GO:0052692GO:GO:0071555gramene_pathway:3.2.1.22gramene_pathway:PWY0-1301hmmpanther:PTHR11452hmmpanther:PTHR11452:SF33
HOGENOM:HOG000161224InterPro:IPR000111InterPro:IPR002241InterPro:IPR013780InterPro:IPR013785InterPro:IPR017853KEGG:00052+3.2.1.22
KEGG:00561+3.2.1.22KEGG:00600+3.2.1.22KEGG:00603+3.2.1.22KEGG:ath:AT3G56310KO:K07407OMA:WNRCSKAPaxDb:Q8VXZ7
Pfam:PF16499Pfam:Q8VXZ7PhylomeDB:Q8VXZ7PIR:T47748PRIDE:Q8VXZ7PRINTS:PR00740PRO:PR:Q8VXZ7
PROSITE:PS00512ProteinModelPortal:Q8VXZ7Proteomes:UP000006548Reactome:R-ATH-1660662RefSeq:NP_191190.2RefSeq:NP_974447.1scanprosite:PS00512
SMR:Q8VXZ7STRING:3702.AT3G56310.1SUPFAM:SSF51011SUPFAM:SSF51445TAIR:AT3G56310TMHMM:TMhelixUniGene:At.23883
UniGene:At.71191UniProt:Q8VXZ7
Coordinates (TAIR10) chr3:+:20882886..20885745
Molecular Weight (calculated) 48365.20 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.14
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIMKKMKDS VLFLVVGLFS LSVLVSQSIA GRVKAPLLQS NTGGLVFSKS FNSIYDTSMY GRLQLNNGLA RTPQMGWNSW NFFACNINET VIKETADALV
101: SSGLADLGYI HVNIDDCWSN LLRDSEGQLV PHPETFPSGI KLLADYVHSK GLKLGIYSDA GVFTCEVHPG SLFHEVDDAD IFASWGVDYL KYDNCFNLGI
201: KPIERYPPMR DALNATGRSI FYSLCEWGVD DPALWAKEVG NSWRTTDDIN DTWASMTTIA DLNNKWAAYA GPGGWNDPDM LEIGNGGMTY EEYRGHFSIW
301: ALMKAPLLIG CDVRNMTAET LEILSNKEII AVNQDPLGVQ GRKIQANGEN DCQQVWSGPL SGDRMVVALW NRCSEPATIT ASWDMIGLES TISVSVRDLW
401: QHKDVTENTS GSFEAQVDAH DCHMYVLTPQ TVSHSDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)