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AT3G56290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW2XeggNOG:ENOG4111PGHEMBL:AK228043EMBL:AL163763EMBL:AY062503EMBL:AY081675EMBL:CP002686
EnsemblPlants:AT3G56290EnsemblPlants:AT3G56290.1entrez:824796GeneID:824796GO:GO:0009658GO:GO:0045893Gramene:AT3G56290.1
hmmpanther:PTHR36771HOGENOM:HOG000238411IntAct:Q9LYL4KEGG:ath:AT3G56290OMA:ICKKDTRPhylomeDB:Q9LYL4PIR:T47746
Proteomes:UP000006548RefSeq:NP_191188.1STRING:3702.AT3G56290.1TAIR:AT3G56290UniGene:At.27406UniProt:Q9LYL4
Coordinates (TAIR10) chr3:-:20878743..20879541
Molecular Weight (calculated) 19923.50 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.84
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFRALPLQH SSGFISTTKV SISRTSPRIF RNPRWVVVSA KQEKDEDKKK NEEETSLFTQ LTDALDFSQV RSEKDAELLY EAREATKSGR KMTQEQYGAL
101: RRKIGGTYKD FFKSYVEVDG QYVEEGWVDK TCKICKKDTK GEARQVDKLG RYAHVSCLQN PPSGNFFTRL FSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)