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AT3G56270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF827)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT2G40480.1); Has 221 Blast hits to 221 proteins in 41 species: Archae - 2; Bacteria - 8; Metazoa - 49; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioGrid:10109eggNOG:ENOG410JUS3eggNOG:ENOG41106KYEMBL:AL163763EMBL:AY086041EMBL:BT004218EMBL:BT005056
EMBL:CP002686EnsemblPlants:AT3G56270EnsemblPlants:AT3G56270.1entrez:824793GeneID:824793Genevisible:Q9LYL6Gramene:AT3G56270.1
hmmpanther:PTHR32054hmmpanther:PTHR32054:SF13HOGENOM:HOG000240040InParanoid:Q9LYL6IntAct:Q9LYL6KEGG:ath:AT3G56270ncoils:Coil
OMA:QWNIESWPaxDb:Q9LYL6Pfam:Q9LYL6PhylomeDB:Q9LYL6PIR:T47744PRIDE:Q9LYL6PRO:PR:Q9LYL6
ProteinModelPortal:Q9LYL6Proteomes:UP000006548RefSeq:NP_191186.1STRING:3702.AT3G56270.1TAIR:AT3G56270UniGene:At.5070UniProt:Q9LYL6
Coordinates (TAIR10) chr3:+:20870220..20871854
Molecular Weight (calculated) 51242.50 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.69
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERQQSPAA ETIPGTPVIR EVRTGTGSEN FNPENTRRGC LRAEIDISPQ LYGGRGFWVP FNLEDNYDCV GEFDIKRMEE QTVELEKDLI MKELETLDLL
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)